C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox homolog 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407418 CBX6-001 ENSG00000183741 9606 - 22:38861450-38872314 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000407418
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000407418 14.634±0.00 16.541±0.00 1.324±0.00 20.518±9.48 6.138±4.53 9.035±8.05 3.683±2.94 20.618±0.00 3.386±0.69 4.359±2.99 2.180±0.00 17.464±18.13 2.794±0.48 5.526±3.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NH CIL_0005NH_0001 CGP 22:38818452-38872314

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000792 IEA heterochromatin
GO:0003727 IEA single-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0031519 IDA PcG protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109627 Cbx6-001 protein_coding Mus_musculus 0 1633
ENSMUST00000109625 Cbx6-002 protein_coding Mus_musculus 0 992
ENSMUST00000089299 Npcd-001 protein_coding Mus_musculus 0 824
ENSMUST00000109623 Cbx6-003 protein_coding Mus_musculus 0 619
ENSMUST00000127721 Cbx6-004 processed_transcript Mus_musculus 0 538
ENSMUST00000129614 Cbx6-005 processed_transcript Mus_musculus 0 473
ENSMUST00000023060 Npcd-002 protein_coding Mus_musculus 0 414
ENSMUST00000148358 Cbx6-006 protein_coding Mus_musculus 0 383
ENSMUST00000141345 Cbx6-007 processed_transcript Mus_musculus 0 342

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