C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromobox 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000089715 Cbx6 10090 - 15:79823896-79834688 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000109623 Cbx6-003 79827837-79834226 protein_coding
  ENSMUST00000109625 Cbx6-002 79826141-79834237 protein_coding
  ENSMUST00000109627 Cbx6-001 79823896-79834688 protein_coding
  ENSMUST00000127721 Cbx6-004 79832572-79834325 processed_transcript
  ENSMUST00000129614 Cbx6-005 79833245-79834274 processed_transcript
  ENSMUST00000141345 Cbx6-007 79828636-79833798 processed_transcript
  ENSMUST00000148358 Cbx6-006 79828777-79834280 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109625ENSMUST00000109627
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109625 13.286±8.16 31.576±2.69 N/A 8.465±0.00 16.531±4.57 10.947±1.46 3.156±0.63 7.938±2.89 1.115±0.82 19.309±4.21 1.145±0.00 43.179±7.46 1.214±0.07 N/A
ENSMUST00000109627 25.996±13.65 16.770±0.78 27.679±12.29 19.500±1.59 14.693±1.76 7.636±0.99 6.385±0.80 16.809±0.93 3.216±2.14 22.505±0.50 2.642±0.79 25.463±11.76 2.892±1.11 1.994±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NH CIL_0005NH_0002 CGP 15:79789675-79834688

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000792 IDA heterochromatin
GO:0003727 IDA single-stranded RNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0031519 ISS PcG protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071051 cbx6a chromobox homolog 6a protein_coding Danio_rerio
ENSDARG00000097543 cbx6b chromobox homolog 6b protein_coding Danio_rerio
ENSG00000183741 CBX6 chromobox homolog 6 protein_coding Homo_sapiens

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