C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coatomer protein complex, subunit beta 2 (beta prime)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000184432 COPB2 9606 - 3:139355600-139389732 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000333188 COPB2-001 139357406-139389732 protein_coding
  ENST00000502734 COPB2-011 139357823-139358743 retained_intron
  ENST00000503326 COPB2-012 139355600-139359121 protein_coding
  ENST00000504295 COPB2-003 139380011-139389646 retained_intron
  ENST00000507777 COPB2-002 139357593-139389676 protein_coding
  ENST00000510181 COPB2-004 139374240-139389587 retained_intron
  ENST00000510491 COPB2-009 139379076-139389560 processed_transcript
  ENST00000512153 COPB2-005 139378125-139389680 protein_coding
  ENST00000512242 COPB2-006 139379056-139389626 protein_coding
  ENST00000512309 COPB2-013 139357832-139371796 protein_coding
  ENST00000513274 COPB2-008 139379047-139389648 protein_coding
  ENST00000514508 COPB2-007 139379084-139389670 protein_coding
  ENST00000515006 COPB2-010 139375598-139389640 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000333188ENST00000507777ENST00000512309
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000333188 8.877±0.00 7.701±0.00 7.312±0.00 12.788±2.39 14.900±2.43 10.998±3.00 6.633±0.26 10.677±2.80 11.034±0.00 14.459±10.00 N/A 13.055±8.18 13.721±0.34 10.898±4.45
ENST00000507777 17.883±0.00 15.138±0.00 N/A N/A 12.441±1.17 12.637±2.19 11.030±0.00 26.329±0.00 14.605±8.30 18.246±0.00 6.908±4.06 14.110±2.59 26.179±1.31 20.779±5.85
ENST00000512309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.317±0.00 36.673±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002R4 CIL_0002R4_0001 CGP 3:139005806-139357223

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005829 TAS cytosol
GO:0006886 IEA intracellular protein transport
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0006891 IDA intra-Golgi vesicle-mediated transport
GO:0016192 IEA vesicle-mediated transport
GO:0030117 IEA membrane coat
GO:0030126 IDA COPI vesicle coat
GO:0048205 TAS COPI coating of Golgi vesicle
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038743 copb2 coatomer protein complex, subunit beta 2 protein_coding Danio_rerio
ENSMUSG00000032458 Copb2 coatomer protein complex, subunit beta 2 (beta prime) protein_coding Mus_musculus

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