C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coatomer protein complex, subunit beta 2 (beta prime)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000333188 COPB2-001 ENSG00000184432 9606 - 3:139357406-139389732 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000333188
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000333188 8.877±0.00 7.701±0.00 7.312±0.00 12.788±2.39 14.900±2.43 10.998±3.00 6.633±0.26 10.677±2.80 11.034±0.00 14.459±10.00 13.055±8.18 13.721±0.34 10.898±4.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002R4 CIL_0002R4_0001 CGP 3:139005806-139357223

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005829 TAS cytosol
GO:0006886 IEA intracellular protein transport
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0006891 IDA intra-Golgi vesicle-mediated transport
GO:0016192 IEA vesicle-mediated transport
GO:0030117 IEA membrane coat
GO:0030126 IDA COPI vesicle coat
GO:0048205 TAS COPI coating of Golgi vesicle
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035033 Copb2-001 protein_coding Mus_musculus 0 3803
ENSMUST00000187336 Copb2-004 retained_intron Mus_musculus 0 407
ENSMUST00000186657 Copb2-002 retained_intron Mus_musculus 0 399
ENSMUST00000189395 Copb2-005 retained_intron Mus_musculus 2e-39 169

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