C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coatomer protein complex, subunit beta 2 (beta prime)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000507777 COPB2-002 ENSG00000184432 9606 - 3:139357593-139389676 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000507777
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000507777 17.883±0.00 15.138±0.00 12.441±1.17 12.637±2.19 11.030±0.00 26.329±0.00 14.605±8.30 18.246±0.00 6.908±4.06 14.110±2.59 26.179±1.31 20.779±5.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002R4 CIL_0002R4_0001 CGP 3:139005806-139357223

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005829 TAS cytosol
GO:0006886 IEA intracellular protein transport
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0006891 IDA intra-Golgi vesicle-mediated transport
GO:0016192 IEA vesicle-mediated transport
GO:0030117 IEA membrane coat
GO:0030126 IDA COPI vesicle coat
GO:0048205 TAS COPI coating of Golgi vesicle
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035033 Copb2-001 protein_coding Mus_musculus 0 3790
ENSMUST00000187336 Copb2-004 retained_intron Mus_musculus 0 407
ENSMUST00000186657 Copb2-002 retained_intron Mus_musculus 0 399
ENSMUST00000189395 Copb2-005 retained_intron Mus_musculus 2e-39 169

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