C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ZFP90 zinc finger protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000184939 ZFP90 9606 + 16:68530090-68576072 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000398253 ZFP90-201 68539758-68567136 protein_coding
  ENST00000562156 ZFP90-008 68539291-68563098 protein_coding
  ENST00000563169 ZFP90-010 68539284-68565068 protein_coding
  ENST00000564323 ZFP90-006 68539291-68563078 protein_coding
  ENST00000564558 ZFP90-002 68539297-68567135 nonsense_mediated_decay
  ENST00000566573 ZFP90-007 68539297-68558172 retained_intron
  ENST00000569109 ZFP90-005 68530090-68558106 protein_coding
  ENST00000569323 ZFP90-009 68539703-68563155 nonsense_mediated_decay
  ENST00000570495 ZFP90-001 68539213-68567131 protein_coding
  ENST00000570884 ZFP90-017 68530284-68558514 processed_transcript
  ENST00000571382 ZFP90-018 68530148-68558101 protein_coding
  ENST00000571720 ZFP90-024 68562061-68565961 retained_intron
  ENST00000571809 ZFP90-012 68539314-68563188 nonsense_mediated_decay
  ENST00000573113 ZFP90-019 68557998-68576072 protein_coding
  ENST00000573161 ZFP90-022 68539795-68555240 protein_coding
  ENST00000573685 ZFP90-013 68539291-68563098 protein_coding
  ENST00000576305 ZFP90-023 68530090-68558105 protein_coding
  ENST00000576805 ZFP90-014 68539323-68563137 nonsense_mediated_decay
  ENST00000611381 ZFP90-202 68539316-68576040 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000398253ENST00000563169ENST00000564558ENST00000570495ENST00000571720
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000398253 2.870±0.00 3.770±0.00 N/A 2.391±0.57 2.115±1.43 3.240±0.00 0.895±0.00 2.882±0.00 0.316±0.00 1.769±1.30 1.041±0.00 2.617±2.11 0.793±0.49 3.798±2.07
ENST00000563169 N/A N/A 0.732±0.00 N/A N/A 0.652±0.00 N/A N/A 0.580±0.00 N/A N/A N/A N/A N/A
ENST00000564558 1.405±0.00 N/A N/A N/A 0.769±0.00 N/A 0.665±0.00 N/A N/A 1.606±0.00 N/A 1.911±0.00 0.267±0.05 0.771±0.00
ENST00000570495 N/A N/A N/A 0.662±0.00 N/A N/A N/A N/A 1.223±0.00 N/A 0.340±0.00 0.764±0.00 0.472±0.17 N/A
ENST00000571720 N/A N/A 0.822±0.00 N/A 1.026±0.00 0.421±0.00 N/A N/A N/A 1.718±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005WZ CIL_0005WZ_0001 CGP 16:68358325-68576072

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043392 IEA negative regulation of DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000096199 si:ch211-194h1.2 zinc finger protein 324 protein_coding Danio_rerio
ENSMUSG00000031907 Zfp90 zinc finger protein 90 protein_coding Mus_musculus

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