C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005WZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000103056-ENSG00000184939 CGP 9606 16:68358325-68576072
GeneTranscriptPositionBiotype
ENSG00000103056 (SMPD3)
sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II) 		ENST00000219334 (SMPD3-001) 68358325-68448688 protein_coding
ENST00000561749 (SMPD3-012) 68371901-68448492 protein_coding
ENST00000563226 (SMPD3-002) 68361134-68372258 protein_coding
ENST00000563396 (SMPD3-011) 68361299-68363693 retained_intron
ENST00000563455 (SMPD3-008) 68367452-68371009 processed_transcript
ENST00000566009 (SMPD3-010) 68364414-68371031 processed_transcript
ENST00000566466 (SMPD3-007) 68368855-68371080 processed_transcript
ENST00000566723 (SMPD3-006) 68370974-68448442 processed_transcript
ENST00000567223 (SMPD3-013) 68363742-68371031 retained_intron
ENST00000567811 (SMPD3-009) 68364580-68371031 retained_intron
ENST00000568373 (SMPD3-003) 68361127-68372258 protein_coding
ENST00000574662 (SMPD3-014) 68360538-68371005 protein_coding
ENSG00000132600 (PRMT7)
protein arginine methyltransferase 7 		ENST00000339507 (PRMT7-001) 68311134-68358553 protein_coding
ENST00000441236 (PRMT7-201) 68315896-68357265 protein_coding
ENST00000449359 (PRMT7-014) 68311056-68357259 protein_coding
ENST00000561806 (PRMT7-024) 68315880-68329226 retained_intron
ENST00000562050 (PRMT7-009) 68311068-68339968 nonsense_mediated_decay
ENST00000562381 (PRMT7-031) 68310974-68337571 nonsense_mediated_decay
ENST00000562456 (PRMT7-013) 68315951-68324865 retained_intron
ENST00000563443 (PRMT7-016) 68324699-68328510 processed_transcript
ENST00000563520 (PRMT7-002) 68311070-68339945 processed_transcript
ENST00000563562 (PRMT7-010) 68315842-68337525 processed_transcript
ENST00000563608 (PRMT7-032) 68352069-68356749 retained_intron
ENST00000564050 (PRMT7-005) 68311054-68346280 processed_transcript
ENST00000564441 (PRMT7-020) 68311063-68339963 processed_transcript
ENST00000565356 (PRMT7-021) 68311064-68352660 retained_intron
ENST00000565745 (PRMT7-019) 68311016-68324766 protein_coding
ENST00000565761 (PRMT7-012) 68323689-68329159 processed_transcript
ENST00000565983 (PRMT7-004) 68311114-68315957 processed_transcript
ENST00000566341 (PRMT7-017) 68311050-68337521 nonsense_mediated_decay
ENST00000566430 (PRMT7-007) 68315979-68321711 retained_intron
ENST00000566657 (PRMT7-023) 68310974-68324790 protein_coding
ENST00000566687 (PRMT7-026) 68346121-68348433 retained_intron
ENST00000566708 (PRMT7-011) 68348407-68352056 processed_transcript
ENST00000567542 (PRMT7-006) 68323983-68358563 retained_intron
ENST00000568463 (PRMT7-028) 68354329-68357249 retained_intron
ENST00000568975 (PRMT7-003) 68315195-68357259 nonsense_mediated_decay
ENST00000569047 (PRMT7-030) 68311056-68339326 protein_coding
ENST00000569571 (PRMT7-027) 68311040-68339486 protein_coding
ENSG00000184939 (ZFP90)
ZFP90 zinc finger protein 		ENST00000398253 (ZFP90-201) 68539758-68567136 protein_coding
ENST00000562156 (ZFP90-008) 68539291-68563098 protein_coding
ENST00000563169 (ZFP90-010) 68539284-68565068 protein_coding
ENST00000564323 (ZFP90-006) 68539291-68563078 protein_coding
ENST00000564558 (ZFP90-002) 68539297-68567135 nonsense_mediated_decay
ENST00000566573 (ZFP90-007) 68539297-68558172 retained_intron
ENST00000569109 (ZFP90-005) 68530090-68558106 protein_coding
ENST00000569323 (ZFP90-009) 68539703-68563155 nonsense_mediated_decay
ENST00000570495 (ZFP90-001) 68539213-68567131 protein_coding
ENST00000570884 (ZFP90-017) 68530284-68558514 processed_transcript
ENST00000571382 (ZFP90-018) 68530148-68558101 protein_coding
ENST00000571720 (ZFP90-024) 68562061-68565961 retained_intron
ENST00000571809 (ZFP90-012) 68539314-68563188 nonsense_mediated_decay
ENST00000573113 (ZFP90-019) 68557998-68576072 protein_coding
ENST00000573161 (ZFP90-022) 68539795-68555240 protein_coding
ENST00000573685 (ZFP90-013) 68539291-68563098 protein_coding
ENST00000576305 (ZFP90-023) 68530090-68558105 protein_coding
ENST00000576805 (ZFP90-014) 68539323-68563137 nonsense_mediated_decay
ENST00000611381 (ZFP90-202) 68539316-68576040 protein_coding
ENSG00000199263 (Y_RNA)
Y RNA 		ENST00000362393 (Y_RNA.1-212) 68474553-68474664 misc_RNA
ENSG00000241334 (RPL35AP33)
ribosomal protein L35a pseudogene 33 		ENST00000482557 (RPL35AP33-001) 68477237-68477570 processed_pseudogene
ENSG00000260084 (RP11-615I2.1)
 ENST00000569654 (RP11-615I2.1-001) 68573782-68589512 antisense
ENSG00000274698 (RP11-71L14.4)
 ENST00000619354 (RP11-71L14.4-001) 68450283-68452318 lincRNA

Homo sapiens Ensembl (GRCh38)

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0005WZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031906-ENSMUSG00000031907 CGP 10090 8:106252548-106425889
GeneTranscriptPositionBiotype
ENSMUSG00000031906 (Smpd3)
sphingomyelin phosphodiesterase 3, neutral 		ENSMUST00000067512 (Smpd3-201) 106252548-106337988 protein_coding
ENSMUSG00000031907 (Zfp90)
zinc finger protein 90 		ENSMUST00000034382 (Zfp90-201) 106415339-106425889 protein_coding
ENSMUSG00000060098 (Prmt7)
protein arginine N-methyltransferase 7 		ENSMUST00000071592 (Prmt7-001) 106210936-106252794 protein_coding
ENSMUST00000109296 (Prmt7-006) 106211218-106227269 protein_coding
ENSMUST00000109297 (Prmt7-003) 106211023-106235389 protein_coding
ENSMUST00000128201 (Prmt7-007) 106212526-106238059 protein_coding
ENSMUST00000134151 (Prmt7-004) 106237761-106244723 processed_transcript
ENSMUST00000147063 (Prmt7-002) 106211037-106243185 retained_intron
ENSMUST00000153272 (Prmt7-005) 106234525-106237394 processed_transcript
ENSMUSG00000074113 (Gm10629)
predicted gene 10629 		ENSMUST00000137706 (Gm10629-001) 106283307-106300017 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005WZ_0001ENSG00000103056ENST00000219334ENST00000574662ENSG00000132600ENST00000339507ENST00000441236ENST00000449359ENST00000561806ENST00000562456ENST00000564050ENST00000565356ENST00000565761ENST00000566341ENST00000566657ENST00000566687ENST00000567542ENST00000568463ENST00000568975ENSG00000184939ENST00000398253ENST00000563169ENST00000564558ENST00000570495ENST00000571720ENSG00000199263ENST00000362393ENSG00000241334ENST00000482557ENSG00000260084ENST00000569654ENSG00000274698ENST00000619354CIL_0005WZ_0002ENSMUSG00000031906ENSMUST00000067512ENSMUSG00000031907ENSMUST00000034382ENSMUSG00000060098ENSMUST00000071592ENSMUST00000109296ENSMUST00000109297ENSMUST00000153272ENSMUSG00000074113ENSMUST00000137706
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000103056 ENST00000219334 N/A N/A N/A 3.715±1.53 N/A N/A N/A N/A N/A N/A N/A 3.877±0.92 N/A 3.669±0.63
ENST00000561749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563396 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574662 N/A N/A N/A 2.535±0.00 N/A N/A N/A 1.368±0.00 N/A 1.738±0.00 N/A N/A N/A N/A
ENSG00000132600 ENST00000339507 N/A N/A 0.270±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441236 4.898±0.00 5.194±0.00 N/A 4.190±1.49 10.274±0.00 3.688±0.00 3.247±2.59 7.313±0.00 1.612±0.00 N/A 4.974±3.87 8.816±3.15 11.023±2.76 9.236±0.21
ENST00000449359 2.503±0.00 5.617±0.00 N/A N/A N/A 2.779±0.00 N/A 1.096±0.00 1.203±0.00 2.905±0.00 1.448±0.00 N/A N/A N/A
ENST00000561806 N/A N/A N/A N/A N/A N/A N/A N/A 4.732±0.00 N/A 5.051±0.00 6.292±0.00 N/A N/A
ENST00000562050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562456 N/A N/A 2.847±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564050 N/A N/A N/A N/A N/A N/A 1.483±0.00 N/A N/A N/A 12.423±0.00 N/A N/A N/A
ENST00000564441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565356 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.879±0.00 N/A 2.411±0.00 N/A N/A
ENST00000565745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.371±0.00 N/A N/A
ENST00000565983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.752±0.00 N/A
ENST00000566430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566657 N/A N/A N/A N/A N/A N/A 3.404±0.00 4.566±0.00 N/A N/A N/A N/A N/A N/A
ENST00000566687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.760±0.00 N/A N/A N/A
ENST00000566708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567542 N/A N/A N/A N/A N/A N/A N/A N/A 0.772±0.00 N/A N/A N/A N/A N/A
ENST00000568463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.021±0.00 N/A N/A
ENST00000568975 N/A N/A N/A N/A N/A N/A N/A N/A 0.909±0.00 N/A N/A N/A N/A N/A
ENST00000569047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000184939 ENST00000398253 2.870±0.00 3.770±0.00 N/A 2.391±0.57 2.115±1.43 3.240±0.00 0.895±0.00 2.882±0.00 0.316±0.00 1.769±1.30 1.041±0.00 2.617±2.11 0.793±0.49 3.798±2.07
ENST00000562156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563169 N/A N/A 0.732±0.00 N/A N/A 0.652±0.00 N/A N/A 0.580±0.00 N/A N/A N/A N/A N/A
ENST00000564323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564558 1.405±0.00 N/A N/A N/A 0.769±0.00 N/A 0.665±0.00 N/A N/A 1.606±0.00 N/A 1.911±0.00 0.267±0.05 0.771±0.00
ENST00000566573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570495 N/A N/A N/A 0.662±0.00 N/A N/A N/A N/A 1.223±0.00 N/A 0.340±0.00 0.764±0.00 0.472±0.17 N/A
ENST00000570884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571720 N/A N/A 0.822±0.00 N/A 1.026±0.00 0.421±0.00 N/A N/A N/A 1.718±0.00 N/A N/A N/A N/A
ENST00000571809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000199263 ENST00000362393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.888±0.60
ENSG00000241334 ENST00000482557 N/A N/A N/A N/A N/A 0.040±0.00 N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000260084 ENST00000569654 0.103±0.00 1.751±0.00 N/A 0.295±0.00 0.477±0.00 0.187±0.10 0.211±0.00 0.197±0.00 0.035±0.00 N/A N/A 0.065±0.00 N/A 0.608±0.16
ENSG00000274698 ENST00000619354 0.006±0.00 0.064±0.00 N/A 0.120±0.06 0.006±0.00 0.016±0.00 N/A 0.034±0.00 N/A 0.215±0.00 N/A 0.076±0.06 0.032±0.00 0.504±0.28
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031906 ENSMUST00000067512 2.889±0.76 3.074±0.31 N/A 10.661±0.55 6.459±1.54 N/A 1.262±0.11 N/A N/A 2.848±0.94 N/A 2.315±0.11 1.894±0.00 1.590±0.00
ENSMUSG00000031907 ENSMUST00000034382 3.798±0.22 N/A 4.597±0.84 11.425±4.96 2.557±0.00 N/A N/A N/A 2.227±0.22 N/A N/A 6.404±2.56 4.106±0.82 N/A
ENSMUSG00000060098 ENSMUST00000071592 6.946±1.88 6.782±2.31 4.419±2.48 12.015±3.53 7.255±2.85 8.252±0.28 6.678±0.75 4.369±1.67 5.418±2.96 5.195±1.76 7.993±1.98 14.417±7.88 5.643±2.38 10.276±2.54
ENSMUST00000109296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.393±0.00
ENSMUST00000109297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.141±0.00 6.165±0.00 10.927±0.00
ENSMUST00000128201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147063 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.170±0.00 N/A N/A
ENSMUSG00000074113 ENSMUST00000137706 0.022±0.01 0.066±0.02 0.015±0.00 0.148±0.02 0.053±0.01 0.089±0.02 N/A 0.031±0.00 0.007±0.00 0.047±0.03 0.021±0.00 0.082±0.07 0.031±0.01 1.455±0.61

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