C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PARP1 binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000185480 PARPBP 9606 + 12:102120185-102197520 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000327680 PARPBP-001 102120245-102197520 protein_coding
  ENST00000392909 PARPBP-012 102120204-102151823 nonsense_mediated_decay
  ENST00000392911 PARPBP-006 102120247-102196429 protein_coding
  ENST00000392914 PARPBP-013 102123886-102152012 retained_intron
  ENST00000412715 PARPBP-010 102123988-102197361 protein_coding
  ENST00000417507 PARPBP-009 102123988-102197361 protein_coding
  ENST00000457614 PARPBP-003 102123988-102197361 nonsense_mediated_decay
  ENST00000535811 PARPBP-011 102123988-102197361 processed_transcript
  ENST00000537257 PARPBP-007 102120245-102149007 protein_coding
  ENST00000541394 PARPBP-002 102120185-102196667 protein_coding
  ENST00000541668 PARPBP-004 102120383-102155280 processed_transcript
  ENST00000543784 PARPBP-008 102120195-102196368 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000327680ENST00000392909ENST00000392911ENST00000412715ENST00000417507ENST00000457614ENST00000535811ENST00000537257ENST00000541394ENST00000541668ENST00000543784
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000327680 0.141±0.00 N/A N/A 0.149±0.00 N/A N/A 0.017±0.00 N/A 0.166±0.00 N/A 0.641±0.13 0.465±0.29 0.708±0.00
ENST00000392909 N/A N/A N/A N/A N/A N/A 0.124±0.00 N/A N/A N/A N/A N/A N/A
ENST00000392911 N/A N/A 0.034±0.00 0.143±0.00 0.555±0.00 0.075±0.02 N/A N/A N/A N/A 1.367±0.00 0.214±0.06 N/A
ENST00000412715 N/A N/A 0.185±0.00 N/A N/A N/A N/A 0.208±0.00 N/A N/A N/A N/A N/A
ENST00000417507 N/A N/A N/A 0.314±0.00 N/A N/A 0.126±0.00 N/A N/A N/A 1.168±0.05 0.140±0.01 0.751±0.00
ENST00000457614 N/A N/A N/A N/A N/A 0.057±0.00 N/A N/A 0.140±0.00 N/A N/A 0.172±0.00 N/A
ENST00000535811 N/A N/A N/A N/A 0.428±0.22 N/A N/A 0.101±0.00 N/A N/A 1.562±0.00 0.125±0.00 N/A
ENST00000537257 N/A N/A 0.182±0.00 N/A 0.099±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541394 N/A N/A N/A 0.752±0.00 N/A N/A N/A N/A N/A N/A 0.759±0.00 N/A N/A
ENST00000541668 0.416±0.00 N/A N/A N/A N/A N/A N/A 0.063±0.00 0.196±0.00 N/A N/A N/A N/A
ENST00000543784 N/A 0.570±0.00 N/A N/A 0.136±0.00 N/A N/A N/A N/A 0.102±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000785 IDA chromatin
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:2000042 IMP negative regulation of double-strand break repair via homologous recombination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029944 parpbp PARP1 binding protein protein_coding Danio_rerio
ENSMUSG00000035365 Parpbp PARP1 binding protein protein_coding Mus_musculus

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