C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PARP1 binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035365 Parpbp 10090 - 10:88091432-88146941 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048518 Parpbp-001 88091432-88146941 protein_coding
  ENSMUST00000164121 Parpbp-004 88126210-88146878 protein_coding
  ENSMUST00000164803 Parpbp-003 88133151-88146878 protein_coding
  ENSMUST00000168163 Parpbp-002 88126230-88146933 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048518ENSMUST00000164121ENSMUST00000164803ENSMUST00000168163
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048518 0.295±0.19 0.286±0.14 0.098±0.06 0.904±0.05 0.141±0.09 0.586±0.40 0.031±0.02 0.023±0.01 2.513±2.59 0.147±0.05 0.022±0.02 0.674±0.32 1.453±1.32 3.415±0.71
ENSMUST00000164121 N/A N/A N/A N/A N/A 0.700±0.00 N/A 0.197±0.06 N/A 0.298±0.13 N/A N/A N/A N/A
ENSMUST00000164803 N/A N/A N/A N/A 0.170±0.00 0.453±0.00 0.150±0.00 0.082±0.00 N/A N/A N/A N/A 4.706±0.00 N/A
ENSMUST00000168163 N/A N/A N/A N/A 0.130±0.00 N/A N/A N/A N/A N/A N/A 1.004±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WS CIL_0008WS_0002 VISTA 10:87568234-88170738

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000785 ISS chromatin
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:2000042 ISS negative regulation of double-strand break repair via homologous recombination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029944 parpbp PARP1 binding protein protein_coding Danio_rerio
ENSG00000185480 PARPBP PARP1 binding protein protein_coding Homo_sapiens

Loading