C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mitochondrial ribosomal protein L40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000185608 MRPL40 9606 + 22:19431902-19436075 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000333130 MRPL40-001 19431902-19436075 protein_coding
  ENST00000443660 MRPL40-002 19432579-19436067 processed_transcript
  ENST00000471259 MRPL40-003 19432939-19436010 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000333130ENST00000443660ENST00000471259
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000333130 14.467±0.00 22.815±0.00 2.117±0.00 11.741±6.55 13.348±10.25 8.280±5.40 11.884±7.22 19.985±5.36 15.679±12.76 5.966±2.68 27.257±10.85 11.804±14.81 8.560±2.72 17.378±9.75
ENST00000443660 N/A 6.450±0.00 N/A 0.874±0.00 0.630±0.00 2.678±0.00 3.256±0.00 N/A N/A 1.879±0.00 N/A 1.783±0.55 4.329±2.22 4.361±1.17
ENST00000471259 N/A N/A N/A N/A 0.907±0.00 N/A N/A 3.757±0.00 N/A 1.882±0.00 N/A 3.774±0.00 2.605±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005F0 CIL_0005F0_0001 CGP 22:19351368-19448232

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 TAS nucleus
GO:0005730 IDA nucleolus
GO:0005739 IDA mitochondrion
GO:0005761 ISS mitochondrial ribosome
GO:0009653 TAS anatomical structure morphogenesis
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043554 mrpl40 mitochondrial ribosomal protein L40 protein_coding Danio_rerio
ENSMUSG00000022706 Mrpl40 mitochondrial ribosomal protein L40 protein_coding Mus_musculus

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