C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mitochondrial ribosomal protein L40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022706 Mrpl40 10090 - 16:18872018-18876767 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023391 Mrpl40-001 18872018-18876767 protein_coding
  ENSMUST00000119273 Mrpl40-002 18872226-18876539 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023391ENSMUST00000119273
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023391 5.370±0.64 7.141±0.52 5.944±0.27 4.541±0.56 4.297±0.40 4.684±1.31 4.373±0.19 5.757±0.83 8.456±5.76 3.304±0.18 7.627±0.66 7.910±4.36 12.474±7.97 7.706±1.56
ENSMUST00000119273 4.264±1.48 2.683±0.57 3.822±0.16 9.155±9.72 5.291±1.63 4.379±1.32 3.640±0.73 4.504±0.76 4.418±2.20 2.876±1.34 5.905±1.02 12.292±9.64 28.607±21.17 37.846±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099J CIL_00099J_0002 VISTA 16:18285741-18886132
CIL_0008BW CIL_0008BW_0002 VISTA 16:18293232-18893684
CIL_0005F0 CIL_0005F0_0002 CGP 16:18836584-18956247

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005730 IEA nucleolus
GO:0005739 IDA mitochondrion
GO:0005761 ISS mitochondrial ribosome
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043554 mrpl40 mitochondrial ribosomal protein L40 protein_coding Danio_rerio
ENSG00000185608 MRPL40 mitochondrial ribosomal protein L40 protein_coding Homo_sapiens

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