C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005F0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000242259-ENSG00000242259 CGP 9606 22:19351368-19448232
GeneTranscriptPositionBiotype
ENSG00000100084 (HIRA)
histone cell cycle regulator 		ENST00000263208 (HIRA-001) 19330698-19431733 protein_coding
ENST00000340170 (HIRA-002) 19330698-19431696 protein_coding
ENST00000452818 (HIRA-004) 19398068-19447450 nonsense_mediated_decay
ENST00000464189 (HIRA-003) 19398061-19430263 processed_transcript
ENSG00000185608 (MRPL40)
mitochondrial ribosomal protein L40 		ENST00000333130 (MRPL40-001) 19431902-19436075 protein_coding
ENST00000443660 (MRPL40-002) 19432579-19436067 processed_transcript
ENST00000471259 (MRPL40-003) 19432939-19436010 processed_transcript
ENSG00000242259 (C22orf39)
chromosome 22 open reading frame 39 		ENST00000333059 (C22orf39-004) 19443371-19447697 protein_coding
ENST00000399562 (C22orf39-001) 19441777-19448232 protein_coding
ENST00000399568 (C22orf39-002) 19440886-19447692 protein_coding
ENST00000509549 (C22orf39-003) 19351368-19447691 nonsense_mediated_decay
ENST00000542103 (C22orf39-201) 19440908-19448232 protein_coding
ENST00000611555 (C22orf39-202) 19443150-19448232 protein_coding
ENSG00000244296 (RN7SL168P)
RNA, 7SL, cytoplasmic 168, pseudogene 		ENST00000463821 (RN7SL168P-201) 19365766-19366044 misc_RNA
CIL_0005F0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000099908-ENSMUSG00000099908 CGP 10090 16:18836584-18956247
GeneTranscriptPositionBiotype
ENSMUSG00000022702 (Hira)
histone cell cycle regulation defective homolog A (S. cerevisiae) 		ENSMUST00000004222 (Hira-001) 18877066-18970309 protein_coding
ENSMUST00000120532 (Hira-002) 18877037-18928030 protein_coding
ENSMUST00000128321 (Hira-004) 18877412-18916586 retained_intron
ENSMUST00000131444 (Hira-006) 18925577-18935135 retained_intron
ENSMUST00000140748 (Hira-009) 18923073-18925657 processed_transcript
ENSMUST00000144609 (Hira-005) 18877270-18910743 retained_intron
ENSMUST00000150799 (Hira-008) 18933013-18947518 processed_transcript
ENSMUST00000153397 (Hira-003) 18877270-18935080 nonsense_mediated_decay
ENSMUSG00000022706 (Mrpl40)
mitochondrial ribosomal protein L40 		ENSMUST00000023391 (Mrpl40-001) 18872018-18876767 protein_coding
ENSMUST00000119273 (Mrpl40-002) 18872226-18876539 protein_coding
ENSMUSG00000071632 (2510002D24Rik)
RIKEN cDNA 2510002D24 gene 		ENSMUST00000055413 (2510002D24Rik-001) 18836578-18840160 protein_coding
ENSMUST00000123146 (2510002D24Rik-002) 18836581-18837387 protein_coding
ENSMUST00000190776 (2510002D24Rik-004) 18836655-18839800 retained_intron
ENSMUST00000191388 (2510002D24Rik-003) 18836581-18840045 protein_coding
ENSMUSG00000082130 (Gm15799)
predicted gene 15799 		ENSMUST00000120899 (Gm15799-001) 18937401-18937689 processed_pseudogene
ENSMUSG00000083658 (Gm15798)
predicted gene 15798 		ENSMUST00000120082 (Gm15798-001) 18944258-18944665 processed_pseudogene
ENSMUSG00000099908 (RP23-357J7.8)
predicted gene 28539 		ENSMUST00000190050 (RP23-357J7.8-001) 18836584-18956247 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005F0_0001ENSG00000100084ENST00000263208ENST00000340170ENST00000452818ENST00000464189ENSG00000185608ENST00000333130ENST00000443660ENST00000471259ENSG00000242259ENST00000333059ENST00000399562ENST00000399568ENST00000509549ENST00000542103ENST00000611555ENSG00000244296ENST00000463821CIL_0005F0_0002ENSMUSG00000022702ENSMUST00000004222ENSMUST00000120532ENSMUST00000128321ENSMUST00000131444ENSMUST00000140748ENSMUST00000144609ENSMUST00000150799ENSMUST00000153397ENSMUSG00000022706ENSMUST00000023391ENSMUST00000119273ENSMUSG00000071632ENSMUST00000055413ENSMUST00000123146ENSMUST00000190776ENSMUST00000191388ENSMUSG00000082130ENSMUST00000120899ENSMUSG00000083658ENSMUST00000120082ENSMUSG00000099908ENSMUST00000190050
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005F0_0001ENSG00000100084ENST00000263208ENSG00000185608ENST00000333130ENST00000443660ENST00000471259ENSG00000242259ENST00000333059ENST00000399562ENST00000399568ENST00000509549ENSG00000244296ENST00000463821CIL_0005F0_0002ENSMUSG00000022702ENSMUST00000004222ENSMUST00000120532ENSMUST00000150799ENSMUST00000153397ENSMUSG00000022706ENSMUST00000023391ENSMUST00000119273ENSMUSG00000071632ENSMUST00000055413ENSMUST00000123146ENSMUST00000190776ENSMUSG00000082130ENSMUST00000120899ENSMUSG00000083658ENSMUST00000120082ENSMUSG00000099908ENSMUST00000190050
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100084 ENST00000263208 5.224±0.00 9.506±0.00 N/A 5.064±2.00 6.285±3.75 4.921±2.40 4.503±3.61 14.764±0.00 7.155±4.78 4.101±1.44 20.866±0.00 10.089±5.37 7.069±0.26 9.523±0.00
ENST00000340170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000185608 ENST00000333130 14.467±0.00 22.815±0.00 2.117±0.00 11.741±6.55 13.348±10.25 8.280±5.40 11.884±7.22 19.985±5.36 15.679±12.76 5.966±2.68 27.257±10.85 11.804±14.81 8.560±2.72 17.378±9.75
ENST00000443660 N/A 6.450±0.00 N/A 0.874±0.00 0.630±0.00 2.678±0.00 3.256±0.00 N/A N/A 1.879±0.00 N/A 1.783±0.55 4.329±2.22 4.361±1.17
ENST00000471259 N/A N/A N/A N/A 0.907±0.00 N/A N/A 3.757±0.00 N/A 1.882±0.00 N/A 3.774±0.00 2.605±0.00 N/A
ENSG00000242259 ENST00000333059 N/A N/A N/A N/A N/A N/A 3.029±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000399562 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.802±0.98 N/A N/A N/A N/A
ENST00000399568 N/A N/A N/A N/A N/A 9.413±0.00 N/A N/A N/A 7.715±0.00 N/A N/A N/A N/A
ENST00000509549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.744±0.00 7.753±0.00 12.059±0.00
ENST00000542103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000244296 ENST00000463821 N/A 0.167±0.00 N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A 0.134±0.00 N/A 0.132±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022702 ENSMUST00000004222 9.431±4.14 6.402±0.95 9.137±1.34 28.875±4.51 6.722±2.58 7.972±2.02 3.333±0.41 5.074±2.08 6.224±3.78 7.316±3.29 2.883±0.40 12.145±4.42 6.047±2.99 1.413±0.00
ENSMUST00000120532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.841±0.05 N/A N/A N/A
ENSMUST00000128321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150799 N/A N/A N/A 42.949±0.00 N/A N/A N/A N/A N/A N/A N/A 47.599±0.00 40.426±18.33 N/A
ENSMUST00000153397 N/A N/A N/A 13.267±0.00 4.540±0.00 N/A N/A N/A N/A N/A N/A 11.937±0.00 20.073±0.00 N/A
ENSMUSG00000022706 ENSMUST00000023391 5.370±0.64 7.141±0.52 5.944±0.27 4.541±0.56 4.297±0.40 4.684±1.31 4.373±0.19 5.757±0.83 8.456±5.76 3.304±0.18 7.627±0.66 7.910±4.36 12.474±7.97 7.706±1.56
ENSMUST00000119273 4.264±1.48 2.683±0.57 3.822±0.16 9.155±9.72 5.291±1.63 4.379±1.32 3.640±0.73 4.504±0.76 4.418±2.20 2.876±1.34 5.905±1.02 12.292±9.64 28.607±21.17 37.846±0.00
ENSMUSG00000071632 ENSMUST00000055413 6.117±0.00 20.335±3.83 17.848±4.32 N/A 16.513±5.65 30.375±2.25 7.410±2.55 9.831±3.77 13.698±5.14 11.210±1.18 4.465±1.49 23.496±3.67 10.193±0.79 N/A
ENSMUST00000123146 N/A 47.142±9.06 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190776 20.275±4.28 22.436±8.21 12.411±2.81 N/A 26.484±8.68 10.475±0.00 17.205±4.36 16.429±2.39 9.976±2.93 14.561±3.66 7.364±1.16 15.463±1.13 13.420±3.37 N/A
ENSMUST00000191388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082130 ENSMUST00000120899 N/A 0.401±0.00 N/A 0.268±0.07 0.631±0.12 N/A N/A 0.278±0.00 0.064±0.01 N/A N/A N/A 0.416±0.25 0.265±0.00
ENSMUSG00000083658 ENSMUST00000120082 0.344±0.06 1.297±0.91 0.175±0.02 0.389±0.14 0.477±0.21 0.410±0.11 0.260±0.01 0.426±0.16 0.236±0.12 0.485±0.19 0.206±0.11 0.405±0.14 0.334±0.20 N/A
ENSMUSG00000099908 ENSMUST00000190050 N/A 5.289±0.50 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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