C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: YTH domain family, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000185728 YTHDF3 9606 + 8:63168553-63212786 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000517371 YTHDF3-010 63168654-63212445 protein_coding
  ENST00000518373 YTHDF3-013 63187530-63189042 processed_transcript
  ENST00000519428 YTHDF3-007 63168621-63175700 retained_intron
  ENST00000522282 YTHDF3-004 63168562-63169491 retained_intron
  ENST00000539294 YTHDF3-001 63168553-63212786 protein_coding
  ENST00000612880 YTHDF3-008 63168687-63186499 protein_coding
  ENST00000613853 YTHDF3-012 63169020-63186360 protein_coding
  ENST00000615676 YTHDF3-003 63168655-63212786 nonsense_mediated_decay
  ENST00000617200 YTHDF3-201 63168553-63212785 protein_coding
  ENST00000617952 YTHDF3-005 63168961-63186261 protein_coding
  ENST00000619337 YTHDF3-011 63169003-63186471 protein_coding
  ENST00000621413 YTHDF3-014 63168661-63209955 protein_coding
  ENST00000621820 YTHDF3-002 63169022-63210105 protein_coding
  ENST00000621890 YTHDF3-006 63169003-63210167 protein_coding
  ENST00000621957 YTHDF3-015 63168652-63210115 protein_coding
  ENST00000623280 YTHDF3-202 63168553-63212785 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000517371ENST00000539294ENST00000615676ENST00000617200ENST00000621413ENST00000621820ENST00000621890ENST00000621957
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000517371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.991±0.00 N/A N/A
ENST00000539294 6.680±0.00 4.191±0.00 1.835±0.00 4.360±1.19 4.451±1.39 4.147±0.24 4.800±2.75 2.763±1.60 4.065±3.22 3.043±1.22 2.320±0.56 5.793±5.01 4.121±2.60 5.000±1.63
ENST00000615676 N/A N/A N/A 1.689±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.387±0.00
ENST00000617200 2.691±0.00 N/A N/A N/A 5.615±0.00 1.312±0.00 N/A 7.239±0.00 1.926±0.00 3.403±0.00 N/A 2.420±2.04 2.791±0.67 N/A
ENST00000621413 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.915±0.00 N/A N/A N/A 2.664±0.00
ENST00000621820 N/A N/A N/A 2.198±0.00 N/A N/A 1.228±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000621890 N/A N/A N/A N/A 7.127±0.00 4.857±0.00 N/A N/A N/A N/A 2.733±0.00 3.075±1.51 N/A N/A
ENST00000621957 N/A N/A N/A N/A N/A N/A 3.407±1.75 3.579±0.00 N/A N/A N/A N/A 2.464±0.00 2.869±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LP CIL_0005LP_0002 CGP 8:63168553-64583628

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0044822 IDA poly(A) RNA binding
GO:1990247 IDA N6-methyladenosine-containing RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057939 ythdf3 YTH domain family 3 protein_coding Danio_rerio
ENSMUSG00000047213 Ythdf3 YTH domain family 3 protein_coding Mus_musculus

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