C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: YTH domain family, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000539294 YTHDF3-001 ENSG00000185728 9606 + 8:63168553-63212786 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000539294
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000539294 6.680±0.00 4.191±0.00 1.835±0.00 4.360±1.19 4.451±1.39 4.147±0.24 4.800±2.75 2.763±1.60 4.065±3.22 3.043±1.22 2.320±0.56 5.793±5.01 4.121±2.60 5.000±1.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LP CIL_0005LP_0002 CGP 8:63168553-64583628

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0044822 IDA poly(A) RNA binding
GO:1990247 IDA N6-methyladenosine-containing RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108345 Ythdf3-201 protein_coding Mus_musculus 0 6508
ENSMUST00000108346 Ythdf3-202 protein_coding Mus_musculus 0 5858
ENSDART00000122294 ythdf3-001 protein_coding Danio_rerio 0 521

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