C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: triadin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000186439 TRDN 9606 - 6:123216339-123637093 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000334268 TRDN-001 123216339-123637093 protein_coding
  ENST00000359698 TRDN-002 123528588-123530565 protein_coding
  ENST00000361029 TRDN-004 123498189-123516206 protein_coding
  ENST00000422596 TRDN-003 123528714-123530565 protein_coding
  ENST00000542443 TRDN-201 123528683-123637093 protein_coding
  ENST00000546248 TRDN-202 123503651-123637093 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334268ENST00000361029ENST00000542443ENST00000546248
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334268 0.020±0.00 0.309±0.00 0.045±0.01 10.087±0.00 0.036±0.03 N/A 0.016±0.01 0.062±0.00 0.024±0.00 28.823±15.22 0.143±0.04 0.035±0.02 3.115±0.00
ENST00000361029 N/A N/A N/A N/A N/A N/A N/A 0.446±0.00 0.133±0.00 N/A N/A 0.088±0.07 N/A
ENST00000542443 N/A N/A 0.091±0.00 N/A 0.095±0.00 6.826±0.00 N/A N/A N/A 20.825±0.00 N/A N/A N/A
ENST00000546248 0.092±0.00 1.286±0.00 0.632±0.00 23.720±0.00 0.293±0.00 107.412±0.00 0.091±0.00 0.261±0.00 0.029±0.00 31.560±0.00 0.853±0.00 0.044±0.00 4.467±0.88

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005783 ISS endoplasmic reticulum
GO:0005886 IDA plasma membrane
GO:0005891 ISS voltage-gated calcium channel complex
GO:0006874 ISS cellular calcium ion homeostasis
GO:0006936 TAS muscle contraction
GO:0010649 TAS regulation of cell communication by electrical coupling
GO:0010880 ISS regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
GO:0014070 IEA response to organic cyclic compound
GO:0014701 ISS junctional sarcoplasmic reticulum membrane
GO:0014808 ISS release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
GO:0014902 IEA myotube differentiation
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016529 IEA sarcoplasmic reticulum
GO:0030314 ISS junctional membrane complex
GO:0030674 ISS protein binding, bridging
GO:0031122 ISS cytoplasmic microtubule organization
GO:0033017 TAS sarcoplasmic reticulum membrane
GO:0033018 TAS sarcoplasmic reticulum lumen
GO:0034220 TAS ion transmembrane transport
GO:0034704 ISS calcium channel complex
GO:0042803 ISS protein homodimerization activity
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044325 ISS ion channel binding
GO:0051279 TAS regulation of release of sequestered calcium ion into cytosol
GO:0051280 IEA negative regulation of release of sequestered calcium ion into cytosol
GO:0051281 IEA positive regulation of release of sequestered calcium ion into cytosol
GO:0055085 TAS transmembrane transport
GO:0060047 IMP heart contraction
GO:0060315 TAS negative regulation of ryanodine-sensitive calcium-release channel activity
GO:0060316 ISS positive regulation of ryanodine-sensitive calcium-release channel activity
GO:0086036 ISS regulation of cardiac muscle cell membrane potential
GO:0090158 ISS endoplasmic reticulum membrane organization
GO:1901846 ISS positive regulation of cell communication by electrical coupling involved in cardiac conduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041779 trdn triadin protein_coding Danio_rerio
ENSMUSG00000019787 Trdn triadin protein_coding Mus_musculus

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