C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDZ domain containing 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000186862 PDZD7 9606 - 10:101007683-101031157 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000370215 PDZD7-003 101017332-101031133 protein_coding
  ENST00000433616 PDZD7-005 101011958-101018869 protein_coding
  ENST00000470414 PDZD7-001 101023128-101031114 protein_coding
  ENST00000474125 PDZD7-004 101007683-101031105 nonsense_mediated_decay
  ENST00000476306 PDZD7-002 101022615-101030130 retained_intron
  ENST00000619208 PDZD7-201 101007684-101031157 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleENST00000370215ENST00000619208
Transcript ID Brain Muscle
ENST00000370215 1.265±0.00 N/A
ENST00000619208 1.268±0.79 0.699±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BD CIL_0008BD_0001 VISTA 10:100486833-101088338
CIL_0007U1 CIL_0007U1_0001 VISTA 10:100491715-101092615
CIL_000940 CIL_000940_0001 VISTA 10:100919065-101519843
CIL_0005ND CIL_0005ND_0001 CGP 10:100987367-101007836
CIL_0001C9 CIL_0001C9_0002 CGP 10:100996618-101031157
CIL_0005NG CIL_0005NG_0001 CGP 10:101007683-101041244

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005929 IDA cilium

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076974 pdzd7a PDZ domain containing 7a protein_coding Danio_rerio
ENSDARG00000090631 PDZD7 (2 of 2) PDZ domain containing 7 protein_coding Danio_rerio
ENSMUSG00000074818 Pdzd7 PDZ domain containing 7 protein_coding Mus_musculus

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