C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S19 binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000187051 RPS19BP1 9606 - 22:39529093-39532855 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000334678 RPS19BP1-001 39529093-39532855 protein_coding
  ENST00000420879 RPS19BP1-006 39529156-39532761 nonsense_mediated_decay
  ENST00000459956 RPS19BP1-004 39529214-39532738 retained_intron
  ENST00000472291 RPS19BP1-003 39531729-39532760 retained_intron
  ENST00000488602 RPS19BP1-002 39529097-39532093 retained_intron
  ENST00000491966 RPS19BP1-005 39529446-39532732 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334678ENST00000459956ENST00000488602ENST00000491966
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334678 33.180±0.00 57.402±0.00 1.561±0.00 27.853±9.15 18.861±13.75 42.215±38.19 19.280±16.81 52.062±41.81 30.507±26.76 37.940±34.37 21.431±13.03 64.449±53.46 77.000±7.17 77.747±11.15
ENST00000459956 N/A 15.379±0.00 N/A 6.961±0.00 17.207±0.00 1.817±0.00 N/A N/A N/A N/A N/A 5.640±0.00 N/A N/A
ENST00000488602 N/A N/A 0.235±0.00 N/A N/A 0.224±0.00 N/A N/A 0.455±0.00 0.432±0.00 N/A N/A N/A N/A
ENST00000491966 N/A N/A 0.667±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005W7 CIL_0005W7_0001 CGP 22:39519695-39532855
CIL_0005W8 CIL_0005W8_0001 CGP 22:39529093-39689737

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005654 ISS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0019899 IPI enzyme binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091124 rps19bp1 ribosomal protein S19 binding protein 1 protein_coding Danio_rerio
ENSMUSG00000051518 Rps19bp1 ribosomal protein S19 binding protein 1 protein_coding Mus_musculus

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