C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C-x(9)-C motif containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000187118 CMC1 9606 + 3:28241584-28325142 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000334841 CMC1-005 28241624-28319773 nonsense_mediated_decay
  ENST00000396610 CMC1-006 28263112-28319741 retained_intron
  ENST00000418849 CMC1-009 28253728-28319773 protein_coding
  ENST00000423894 CMC1-004 28241618-28319771 protein_coding
  ENST00000466830 CMC1-002 28241595-28325142 protein_coding
  ENST00000467644 CMC1-010 28297101-28319773 processed_transcript
  ENST00000468330 CMC1-007 28291801-28316407 processed_transcript
  ENST00000469102 CMC1-003 28315901-28319773 processed_transcript
  ENST00000477739 CMC1-001 28241584-28319762 retained_intron
  ENST00000482499 CMC1-011 28316353-28319776 processed_transcript
  ENST00000495428 CMC1-008 28291848-28319770 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLungOvaryPlacentaTestisENST00000334841ENST00000418849ENST00000423894ENST00000477739
Transcript ID Breast Heart Kidney Lung Ovary Placenta Testis
ENST00000334841 N/A 12.551±0.00 N/A N/A N/A 10.569±0.00 18.513±0.00
ENST00000418849 N/A N/A 8.540±0.00 N/A N/A N/A N/A
ENST00000423894 N/A N/A N/A N/A N/A 12.630±1.50 N/A
ENST00000477739 2.124±0.00 N/A N/A 1.715±0.00 1.271±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L2 CIL_0008L2_0001 VISTA 3:27692337-28294260
CIL_0002DZ CIL_0002DZ_0002 CGP 3:27715949-28325142

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005739 IEA mitochondrion
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042996 cmc1 COX assembly mitochondrial protein 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000039163 Cmc1 COX assembly mitochondrial protein 1 protein_coding Mus_musculus

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