C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000187372 PCDHB13 9606 + 5:141213919-141218979 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341948 PCDHB13-001 141213919-141218979 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341948
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341948 0.537±0.00 0.499±0.00 0.216±0.00 0.572±0.27 0.605±0.14 0.488±0.06 0.527±0.09 0.189±0.15 0.317±0.26 0.509±0.15 0.131±0.03 0.330±0.14 0.524±0.18 0.476±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000B CGP 5:141208697-141218979
CIL_00062S CIL_00062S_000E CGP 5:141213919-141227759

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSMUSG00000047910 Pcdhb16 protocadherin beta 16 protein_coding Mus_musculus

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