C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 16
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047910 Pcdhb16 10090 + 18:37477768-37483035 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000051442 Pcdhb16-201 37477768-37483035 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051442
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051442 1.131±0.64 1.300±0.10 0.472±0.02 0.571±0.14 0.932±0.37 0.483±0.15 0.367±0.01 0.539±0.12 0.066±0.06 2.205±0.48 0.109±0.03 1.987±1.19 0.027±0.04 0.066±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000R CGP 18:37473546-37483035
CIL_00062S CIL_00062S_000T CGP 18:37477768-37488289

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007416 TAS synapse assembly
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSG00000120322 PCDHB8 protocadherin beta 8 protein_coding Homo_sapiens
ENSG00000187372 PCDHB13 protocadherin beta 13 protein_coding Homo_sapiens

Loading