C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341948 PCDHB13-001 ENSG00000187372 9606 + 5:141213919-141218979 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341948
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341948 0.537±0.00 0.499±0.00 0.216±0.00 0.572±0.27 0.605±0.14 0.488±0.06 0.527±0.09 0.189±0.15 0.317±0.26 0.509±0.15 0.131±0.03 0.330±0.14 0.524±0.18 0.476±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000B CGP 5:141208697-141218979
CIL_00062S CIL_00062S_000E CGP 5:141213919-141227759

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051442 Pcdhb16-201 protein_coding Mus_musculus 0 1729
ENSMUST00000053856 Pcdhb17-201 protein_coding Mus_musculus 0 1140
ENSMUST00000052387 Pcdhb14-201 protein_coding Mus_musculus 0 948
ENSMUST00000056522 Pcdhb2-201 protein_coding Mus_musculus 0 894
ENSMUST00000056915 Pcdhb13-201 protein_coding Mus_musculus 0 869
ENSMUST00000059571 Pcdhb19-201 protein_coding Mus_musculus 0 850
ENSMUST00000056712 Pcdhb4-201 protein_coding Mus_musculus 0 845
ENSMUST00000061717 Pcdhb6-201 protein_coding Mus_musculus 0 841
ENSMUST00000061405 Pcdhb21-201 protein_coding Mus_musculus 0 832
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0 830
ENSMUST00000051163 Pcdhb8-201 protein_coding Mus_musculus 0 819
ENSMUST00000051754 Pcdhb3-201 protein_coding Mus_musculus 0 789
ENSMUST00000050034 Pcdhb15-201 protein_coding Mus_musculus 0 763
ENSMUST00000051126 Pcdhb10-201 protein_coding Mus_musculus 2e-31 143
ENSMUST00000055495 Pcdhb12-201 protein_coding Mus_musculus 2e-26 126

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