C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Fanconi anemia, complementation group A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000187741 FANCA 9606 - 16:89737549-89816657 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000305699 FANCA-009 89739741-89765039 retained_intron
  ENST00000389301 FANCA-001 89737549-89816646 protein_coding
  ENST00000389302 FANCA-003 89798374-89816657 protein_coding
  ENST00000534992 FANCA-201 89798919-89816655 protein_coding
  ENST00000543736 FANCA-004 89798919-89816657 protein_coding
  ENST00000561660 FANCA-022 89745027-89765044 nonsense_mediated_decay
  ENST00000561667 FANCA-018 89769915-89770583 retained_intron
  ENST00000561722 FANCA-027 89738493-89740078 protein_coding
  ENST00000562424 FANCA-029 89738495-89739758 retained_intron
  ENST00000563318 FANCA-020 89752161-89767147 nonsense_mediated_decay
  ENST00000563510 FANCA-019 89748764-89764947 nonsense_mediated_decay
  ENST00000563513 FANCA-011 89808311-89816621 nonsense_mediated_decay
  ENST00000563673 FANCA-006 89798385-89816635 protein_coding
  ENST00000563767 FANCA-017 89791044-89792011 retained_intron
  ENST00000564475 FANCA-028 89738744-89742894 protein_coding
  ENST00000564870 FANCA-030 89738883-89742828 protein_coding
  ENST00000564969 FANCA-024 89739363-89745008 retained_intron
  ENST00000565582 FANCA-012 89798991-89815978 nonsense_mediated_decay
  ENST00000566133 FANCA-014 89791563-89792725 retained_intron
  ENST00000566409 FANCA-007 89795906-89799232 nonsense_mediated_decay
  ENST00000566889 FANCA-005 89798354-89816647 retained_intron
  ENST00000567205 FANCA-008 89767142-89770024 nonsense_mediated_decay
  ENST00000567284 FANCA-031 89770430-89778850 processed_transcript
  ENST00000567510 FANCA-016 89773320-89779957 nonsense_mediated_decay
  ENST00000567621 FANCA-013 89791508-89808366 nonsense_mediated_decay
  ENST00000567879 FANCA-026 89738630-89745062 protein_coding
  ENST00000567883 FANCA-032 89810572-89816608 retained_intron
  ENST00000567943 FANCA-010 89810985-89816648 nonsense_mediated_decay
  ENST00000567988 FANCA-021 89742902-89765004 nonsense_mediated_decay
  ENST00000568369 FANCA-002 89738403-89816646 protein_coding
  ENST00000568626 FANCA-023 89739282-89749816 nonsense_mediated_decay
  ENST00000568983 FANCA-025 89744687-89749796 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389301ENST00000564969ENST00000567879
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389301 0.762±0.00 N/A 0.175±0.00 1.907±0.00 1.279±0.00 1.955±0.00 N/A 1.771±0.00 1.001±0.00 N/A 0.230±0.00 1.382±0.00 1.723±0.44 11.917±6.01
ENST00000564969 N/A 19.600±0.00 2.577±0.00 N/A N/A 12.198±0.00 N/A N/A 1.952±0.00 4.262±0.00 2.824±0.00 2.033±0.00 N/A N/A
ENST00000567879 N/A N/A N/A N/A N/A N/A 1.147±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005Z CIL_00005Z_0001 CGP 16:89707134-89740903
CIL_000063 CIL_000063_0001 CGP 16:89720400-89816657
CIL_000069 CIL_000069_0001 CGP 16:89737549-89871319

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006281 TAS DNA repair
GO:0006461 TAS protein complex assembly
GO:0007140 IEA male meiosis
GO:0008584 IEA male gonad development
GO:0008585 IEA female gonad development
GO:0042127 IEA regulation of cell proliferation
GO:0043240 IDA Fanconi anaemia nuclear complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070216 FANCA Fanconi anemia, complementation group A protein_coding Danio_rerio
ENSMUSG00000032815 Fanca Fanconi anemia, complementation group A protein_coding Mus_musculus

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