C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Fanconi anemia, complementation group A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389301 FANCA-001 ENSG00000187741 9606 - 16:89737549-89816646 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENST00000389301
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000389301 0.762±0.00 0.175±0.00 1.907±0.00 1.279±0.00 1.955±0.00 1.771±0.00 1.001±0.00 0.230±0.00 1.382±0.00 1.723±0.44 11.917±6.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005Z CIL_00005Z_0001 CGP 16:89707134-89740903
CIL_000063 CIL_000063_0001 CGP 16:89720400-89816657
CIL_000069 CIL_000069_0001 CGP 16:89737549-89871319

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006281 TAS DNA repair
GO:0006461 TAS protein complex assembly
GO:0007140 IEA male meiosis
GO:0008584 IEA male gonad development
GO:0008585 IEA female gonad development
GO:0042127 IEA regulation of cell proliferation
GO:0043240 IDA Fanconi anaemia nuclear complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000146158 Zfp276-003 retained_intron Mus_musculus 0 429
ENSMUST00000156896 Zfp276-002 retained_intron Mus_musculus 0 315
ENSMUST00000001092 Zfp276-001 protein_coding Mus_musculus 0 315
ENSMUST00000147312 Zfp276-004 retained_intron Mus_musculus 0 207

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