C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: caspase recruitment domain family, member 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000187796 CARD9 9606 - 9:136361903-136373681 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000371732 CARD9-004 136363956-136373681 protein_coding
  ENST00000371734 CARD9-001 136363956-136373681 protein_coding
  ENST00000460290 CARD9-003 136363956-136367630 processed_transcript
  ENST00000481053 CARD9-005 136361903-136373644 retained_intron
  ENST00000485975 CARD9-007 136363957-136370893 retained_intron
  ENST00000489932 CARD9-002 136364293-136373659 nonsense_mediated_decay
  ENST00000556340 CARD9-008 136370594-136373646 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastOvaryPlacentaENST00000371732ENST00000371734ENST00000481053ENST00000485975ENST00000489932
Transcript ID Bladder Breast Ovary Placenta
ENST00000371732 N/A 0.539±0.00 13.531±0.00 3.106±0.24
ENST00000371734 0.251±0.00 N/A N/A N/A
ENST00000481053 N/A N/A 3.221±0.00 N/A
ENST00000485975 0.215±0.00 N/A 1.759±1.51 N/A
ENST00000489932 N/A N/A 1.829±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034L CIL_00034L_0001 CGP 9:136327476-136363789
CIL_00034K CIL_00034K_0001 CGP 9:136359480-136373681
CIL_0002E9 CIL_0002E9_0002 CGP 9:136361903-136398797

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0009620 IEA response to fungus
GO:0032494 IEA response to peptidoglycan
GO:0032495 IEA response to muramyl dipeptide
GO:0032755 IEA positive regulation of interleukin-6 production
GO:0032760 IEA positive regulation of tumor necrosis factor production
GO:0032874 IDA positive regulation of stress-activated MAPK cascade
GO:0035872 TAS nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway
GO:0042493 IEA response to drug
GO:0042534 IEA regulation of tumor necrosis factor biosynthetic process
GO:0042803 IPI protein homodimerization activity
GO:0042981 IEA regulation of apoptotic process
GO:0043123 IEP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043330 IEA response to exogenous dsRNA
GO:0045076 IEA regulation of interleukin-2 biosynthetic process
GO:0045087 TAS innate immune response
GO:0045089 IEA positive regulation of innate immune response
GO:0045408 IEA regulation of interleukin-6 biosynthetic process
GO:0046330 IDA positive regulation of JNK cascade
GO:0050700 IPI CARD domain binding
GO:0050830 IEA defense response to Gram-positive bacterium
GO:0051607 IEA defense response to virus
GO:0070423 TAS nucleotide-binding oligomerization domain containing signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067672 card9 caspase recruitment domain family, member 9 protein_coding Danio_rerio
ENSMUSG00000026928 Card9 caspase recruitment domain family, member 9 protein_coding Mus_musculus

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