C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caspase recruitment domain family, member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371732 CARD9-004 ENSG00000187796 9606 - 9:136363956-136373681 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastOvaryPlacentaENST00000371732
Transcript ID Breast Ovary Placenta
ENST00000371732 0.539±0.00 13.531±0.00 3.106±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034L CIL_00034L_0001 CGP 9:136327476-136363789
CIL_00034K CIL_00034K_0001 CGP 9:136359480-136373681
CIL_0002E9 CIL_0002E9_0002 CGP 9:136361903-136398797

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0009620 IEA response to fungus
GO:0032494 IEA response to peptidoglycan
GO:0032495 IEA response to muramyl dipeptide
GO:0032755 IEA positive regulation of interleukin-6 production
GO:0032760 IEA positive regulation of tumor necrosis factor production
GO:0032874 IDA positive regulation of stress-activated MAPK cascade
GO:0035872 TAS nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway
GO:0042493 IEA response to drug
GO:0042534 IEA regulation of tumor necrosis factor biosynthetic process
GO:0042803 IPI protein homodimerization activity
GO:0042981 IEA regulation of apoptotic process
GO:0043123 IEP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043330 IEA response to exogenous dsRNA
GO:0045076 IEA regulation of interleukin-2 biosynthetic process
GO:0045087 TAS innate immune response
GO:0045089 IEA positive regulation of innate immune response
GO:0045408 IEA regulation of interleukin-6 biosynthetic process
GO:0046330 IDA positive regulation of JNK cascade
GO:0050700 IPI CARD domain binding
GO:0050830 IEA defense response to Gram-positive bacterium
GO:0051607 IEA defense response to virus
GO:0070423 TAS nucleotide-binding oligomerization domain containing signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100303 Card9-201 protein_coding Mus_musculus 0 1633
ENSMUST00000028294 Card9-001 protein_coding Mus_musculus 0 1633

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