C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002E9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000067672-ENSDARG00000067673 CGP 7955 5:52843283-52884641
GeneTranscriptPositionBiotype
ENSDARG00000067672 (card9)
caspase recruitment domain family, member 9 		ENSDART00000097471 (card9-201) 52843283-52852182 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002E9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000187796-ENSG00000165684 CGP 9606 9:136361903-136398797
GeneTranscriptPositionBiotype
ENSG00000165684 (SNAPC4)
small nuclear RNA activating complex, polypeptide 4, 190kDa 		ENST00000298532 (SNAPC4-001) 136375577-136398797 protein_coding
ENSG00000187796 (CARD9)
caspase recruitment domain family, member 9 		ENST00000371732 (CARD9-004) 136363956-136373681 protein_coding
ENST00000371734 (CARD9-001) 136363956-136373681 protein_coding
ENST00000460290 (CARD9-003) 136363956-136367630 processed_transcript
ENST00000481053 (CARD9-005) 136361903-136373644 retained_intron
ENST00000485975 (CARD9-007) 136363957-136370893 retained_intron
ENST00000489932 (CARD9-002) 136364293-136373659 nonsense_mediated_decay
ENST00000556340 (CARD9-008) 136370594-136373646 retained_intron
ENSG00000213221 (DNLZ)
DNL-type zinc finger 		ENST00000371738 (DNLZ-001) 136361900-136363789 protein_coding
ENST00000371739 (DNLZ-002) 136359480-136363719 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0002E9_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026928-ENSMUSG00000036281 CGP 10090 2:26352176-26380653
GeneTranscriptPositionBiotype
ENSMUSG00000026928 (Card9)
caspase recruitment domain family, member 9 		ENSMUST00000028294 (Card9-001) 26352187-26360918 protein_coding
ENSMUST00000100303 (Card9-201) 26352176-26359747 protein_coding
ENSMUST00000153370 (Card9-002) 26352187-26352775 processed_transcript
ENSMUSG00000036281 (Snapc4)
small nuclear RNA activating complex, polypeptide 4 		ENSMUST00000035427 (Snapc4-201) 26362774-26380653 protein_coding
ENSMUST00000114115 (Snapc4-001) 26362765-26380649 protein_coding
ENSMUST00000123934 (Snapc4-008) 26369457-26373631 protein_coding
ENSMUST00000124843 (Snapc4-004) 26377638-26380653 processed_transcript
ENSMUST00000125789 (Snapc4-011) 26369507-26371142 processed_transcript
ENSMUST00000133778 (Snapc4-010) 26370833-26373355 processed_transcript
ENSMUST00000135171 (Snapc4-013) 26362767-26365024 processed_transcript
ENSMUST00000136054 (Snapc4-012) 26366614-26367770 processed_transcript
ENSMUST00000144871 (Snapc4-006) 26373562-26374738 processed_transcript
ENSMUST00000148024 (Snapc4-007) 26369984-26374128 processed_transcript
ENSMUST00000149316 (Snapc4-009) 26369486-26373611 processed_transcript
ENSMUST00000149850 (Snapc4-003) 26362776-26380632 processed_transcript
ENSMUST00000150121 (Snapc4-002) 26370833-26380635 processed_transcript
ENSMUST00000155643 (Snapc4-005) 26378343-26380626 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002E9_0001ENSDARG00000067672ENSDART00000097471CIL_0002E9_0002ENSG00000165684ENST00000298532ENSG00000187796ENST00000371732ENST00000371734ENST00000460290ENST00000481053ENST00000485975ENST00000489932ENST00000556340ENSG00000213221ENST00000371738ENST00000371739CIL_0002E9_0003ENSMUSG00000026928ENSMUST00000028294ENSMUST00000100303ENSMUST00000153370ENSMUSG00000036281ENSMUST00000035427ENSMUST00000114115ENSMUST00000123934ENSMUST00000124843ENSMUST00000125789ENSMUST00000133778ENSMUST00000135171ENSMUST00000136054ENSMUST00000144871ENSMUST00000148024ENSMUST00000149316ENSMUST00000149850ENSMUST00000150121ENSMUST00000155643
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002E9_0001ENSDARG00000067672ENSDART00000097471CIL_0002E9_0002ENSG00000165684ENST00000298532ENSG00000187796ENST00000371732ENST00000371734ENST00000481053ENST00000485975ENST00000489932ENSG00000213221ENST00000371738ENST00000371739CIL_0002E9_0003ENSMUSG00000026928ENSMUST00000028294ENSMUST00000100303ENSMUSG00000036281ENSMUST00000035427ENSMUST00000114115ENSMUST00000123934ENSMUST00000135171ENSMUST00000149316ENSMUST00000149850
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000067672 ENSDART00000097471 N/A N/A N/A 0.443±0.12 N/A N/A 1.345±0.06 1.668±0.00 0.218±0.00 N/A 1.305±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000165684 ENST00000298532 1.832±0.00 3.224±0.00 0.459±0.00 1.940±0.95 1.504±0.83 0.792±0.37 0.630±0.42 1.168±0.60 0.658±0.45 0.809±0.43 1.999±0.00 2.111±2.47 0.732±0.36 4.790±1.02
ENSG00000187796 ENST00000371732 N/A N/A N/A N/A 0.539±0.00 N/A N/A N/A N/A N/A N/A 13.531±0.00 3.106±0.24 N/A
ENST00000371734 N/A N/A 0.251±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.221±0.00 N/A N/A
ENST00000485975 N/A N/A 0.215±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.759±1.51 N/A N/A
ENST00000489932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.829±0.00 N/A N/A
ENST00000556340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213221 ENST00000371738 12.325±0.00 68.134±0.00 0.415±0.00 N/A 19.178±0.00 20.718±0.00 16.283±14.80 16.350±16.01 8.607±0.00 26.196±0.00 8.241±7.84 1.934±0.00 15.311±3.14 17.359±2.26
ENST00000371739 N/A N/A N/A N/A N/A N/A N/A N/A 0.259±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026928 ENSMUST00000028294 N/A N/A N/A N/A N/A N/A N/A N/A 4.982±0.89 8.393±1.30 N/A N/A N/A N/A
ENSMUST00000100303 N/A N/A N/A N/A N/A N/A N/A N/A 2.838±0.00 N/A N/A N/A N/A N/A
ENSMUST00000153370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000036281 ENSMUST00000035427 2.589±0.40 3.301±1.21 N/A 3.118±0.00 3.455±0.00 1.833±0.50 0.899±0.20 2.843±1.09 1.969±1.18 3.606±1.69 0.641±0.00 8.792±3.76 3.685±1.10 2.532±1.12
ENSMUST00000114115 2.187±0.87 1.898±0.00 6.111±0.65 7.544±2.22 1.959±0.00 1.394±0.17 2.143±0.00 1.467±0.02 2.880±1.32 N/A 0.856±0.28 5.049±0.00 4.199±1.32 0.861±0.00
ENSMUST00000123934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.213±0.00
ENSMUST00000124843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133778 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135171 N/A 9.439±1.69 N/A N/A N/A N/A 3.937±0.00 5.419±1.87 N/A N/A N/A 15.611±3.62 N/A 5.356±0.49
ENSMUST00000136054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149316 N/A N/A N/A 30.480±0.00 N/A N/A N/A N/A N/A N/A N/A 17.116±0.00 11.868±4.08 N/A
ENSMUST00000149850 N/A N/A 2.326±0.00 N/A N/A N/A 0.702±0.00 0.689±0.10 N/A N/A 0.775±0.36 2.922±0.55 2.184±0.00 N/A
ENSMUST00000150121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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