C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XIV, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000187955 COL14A1 9606 + 8:120059780-120372036 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000247781 COL14A1-201 120250747-120372027 protein_coding
  ENST00000297848 COL14A1-001 120125108-120372036 protein_coding
  ENST00000309791 COL14A1-003 120125108-120370917 protein_coding
  ENST00000432943 COL14A1-006 120125144-120277865 processed_transcript
  ENST00000434620 COL14A1-005 120196916-120266992 protein_coding
  ENST00000440844 COL14A1-004 120345446-120371081 protein_coding
  ENST00000498051 COL14A1-002 120059780-120232090 nonsense_mediated_decay
  ENST00000523142 COL14A1-007 120196801-120216492 protein_coding
  ENST00000537875 COL14A1-202 120107378-120232087 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000247781ENST00000297848ENST00000309791ENST00000434620ENST00000523142
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000247781 3.714±0.00 9.342±0.00 N/A 0.204±0.00 9.501±0.00 6.609±1.44 2.043±0.00 6.349±0.00 1.863±0.00 6.941±0.00 0.919±0.00 23.865±14.89 22.433±3.40 6.891±5.71
ENST00000297848 N/A N/A 2.998±0.00 0.078±0.04 8.292±0.00 2.894±0.50 1.438±0.48 1.582±0.00 15.431±0.00 2.951±0.75 N/A 3.374±1.75 10.071±0.00 0.474±0.00
ENST00000309791 4.244±0.00 6.229±0.00 1.312±0.00 0.301±0.04 4.115±0.02 3.497±1.23 0.820±0.04 1.501±0.61 3.864±3.25 3.222±0.20 1.138±0.00 8.361±6.11 17.492±2.55 3.361±2.86
ENST00000434620 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.673±0.00 N/A N/A N/A N/A
ENST00000523142 N/A N/A N/A N/A N/A N/A N/A 3.119±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00023Z CIL_00023Z_0002 CGP 8:119873717-120372036
CIL_00009J CIL_00009J_0002 CGP 8:120059780-120445402

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003229 IEA ventricular cardiac muscle tissue development
GO:0005201 NAS extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005518 NAS collagen binding
GO:0005576 TAS extracellular region
GO:0005578 NAS proteinaceous extracellular matrix
GO:0005581 NAS collagen trimer
GO:0005596 NAS collagen type XIV trimer
GO:0005614 IEA interstitial matrix
GO:0005615 IDA extracellular space
GO:0005788 TAS endoplasmic reticulum lumen
GO:0016337 NAS single organismal cell-cell adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 NAS extracellular matrix organization
GO:0030199 NAS collagen fibril organization
GO:0030574 TAS collagen catabolic process
GO:0030674 NAS protein binding, bridging
GO:0031012 IDA extracellular matrix
GO:0044822 IDA poly(A) RNA binding
GO:0048873 IEA homeostasis of number of cells within a tissue
GO:0061050 IEA regulation of cell growth involved in cardiac muscle cell development
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005762 col14a1a collagen, type XIV, alpha 1a protein_coding Danio_rerio
ENSMUSG00000022371 Col14a1 collagen, type XIV, alpha 1 protein_coding Mus_musculus

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