C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00009J_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000005762-ENSDARG00000056903 CGP 7955 16:16979935-17392532
GeneTranscriptPositionBiotype
ENSDARG00000005762 (col14a1a)
collagen, type XIV, alpha 1a 		ENSDART00000027982 (col14a1a-201) 17005455-17343770 protein_coding
ENSDART00000134087 (col14a1a-001) 17107604-17345861 protein_coding
ENSDART00000137912 (col14a1a-002) 17002979-17095364 protein_coding
ENSDART00000138611 (col14a1a-003) 16979935-17039328 protein_coding
ENSDARG00000056903 (mrpl13)
mitochondrial ribosomal protein L13 		ENSDART00000079480 (mrpl13-001) 17347532-17392532 protein_coding
ENSDARG00000087428 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000130511 (5S_rRNA.1603-201) 17055448-17055564 rRNA

Danio rerio Ensembl (Zv9)

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CIL_00009J_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000187955-ENSG00000172172 CGP 9606 8:120059780-120445402
GeneTranscriptPositionBiotype
ENSG00000172167 (MTBP)
MDM2 binding protein 		ENST00000305949 (MTBP-001) 120445426-120523635 protein_coding
ENST00000456899 (MTBP-005) 120445400-120451335 retained_intron
ENST00000519188 (MTBP-006) 120488161-120490703 retained_intron
ENST00000519556 (MTBP-007) 120518703-120541965 nonsense_mediated_decay
ENST00000519841 (MTBP-008) 120538695-120542133 processed_transcript
ENST00000522308 (MTBP-002) 120445422-120452829 retained_intron
ENST00000522449 (MTBP-004) 120459276-120473950 retained_intron
ENST00000523373 (MTBP-003) 120445422-120470937 nonsense_mediated_decay
ENSG00000172172 (MRPL13)
mitochondrial ribosomal protein L13 		ENST00000306185 (MRPL13-001) 120395847-120445386 protein_coding
ENST00000518696 (MRPL13-003) 120395437-120445402 nonsense_mediated_decay
ENST00000518918 (MRPL13-005) 120413991-120445092 protein_coding
ENST00000520677 (MRPL13-004) 120419656-120445099 retained_intron
ENST00000521648 (MRPL13-007) 120380761-120414112 nonsense_mediated_decay
ENST00000522717 (MRPL13-006) 120395847-120414191 retained_intron
ENST00000613356 (MRPL13-002) 120395848-120416079 retained_intron
ENSG00000187955 (COL14A1)
collagen, type XIV, alpha 1 		ENST00000247781 (COL14A1-201) 120250747-120372027 protein_coding
ENST00000297848 (COL14A1-001) 120125108-120372036 protein_coding
ENST00000309791 (COL14A1-003) 120125108-120370917 protein_coding
ENST00000432943 (COL14A1-006) 120125144-120277865 processed_transcript
ENST00000434620 (COL14A1-005) 120196916-120266992 protein_coding
ENST00000440844 (COL14A1-004) 120345446-120371081 protein_coding
ENST00000498051 (COL14A1-002) 120059780-120232090 nonsense_mediated_decay
ENST00000523142 (COL14A1-007) 120196801-120216492 protein_coding
ENST00000537875 (COL14A1-202) 120107378-120232087 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_00009J_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022371-ENSMUSG00000022370 CGP 10090 15:55307750-55557748
GeneTranscriptPositionBiotype
ENSMUSG00000022369 (Mtbp)
Mdm2, transformed 3T3 cell double minute p53 binding protein 		ENSMUST00000022998 (Mtbp-001) 55557408-55626423 protein_coding
ENSMUST00000166449 (Mtbp-006) 55621452-55626421 processed_transcript
ENSMUST00000169517 (Mtbp-004) 55557735-55569077 nonsense_mediated_decay
ENSMUST00000169667 (Mtbp-003) 55576780-55626422 protein_coding
ENSMUST00000170046 (Mtbp-002) 55557595-55610813 protein_coding
ENSMUST00000171146 (Mtbp-005) 55617587-55619938 retained_intron
ENSMUSG00000022371 (Col14a1)
collagen, type XIV, alpha 1 		ENSMUST00000023053 (Col14a1-001) 55307750-55520803 protein_coding
ENSMUST00000110217 (Col14a1-201) 55307751-55520801 protein_coding
ENSMUST00000110221 (Col14a1-202) 55307750-55520802 protein_coding
ENSMUST00000125416 (Col14a1-002) 55448826-55519689 protein_coding
ENSMUSG00000101568 (RP24-291M22.1)
RIKEN cDNA 1700040F17 gene 		ENSMUST00000187158 (RP24-291M22.1-001) 55436115-55439020 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00009J_0001ENSDARG00000005762ENSDART00000027982ENSDART00000134087ENSDART00000137912ENSDART00000138611ENSDARG00000056903ENSDART00000079480ENSDARG00000087428ENSDART00000130511CIL_00009J_0002ENSG00000172167ENST00000305949ENST00000456899ENST00000519188ENST00000519556ENST00000519841ENST00000522308ENST00000522449ENST00000523373ENSG00000172172ENST00000306185ENST00000518696ENST00000518918ENST00000520677ENST00000521648ENST00000522717ENST00000613356ENSG00000187955ENST00000247781ENST00000297848ENST00000309791ENST00000432943ENST00000434620ENST00000440844ENST00000498051ENST00000523142ENST00000537875CIL_00009J_0003ENSMUSG00000022369ENSMUST00000022998ENSMUST00000166449ENSMUST00000169517ENSMUST00000169667ENSMUST00000170046ENSMUST00000171146ENSMUSG00000022371ENSMUST00000023053ENSMUST00000110217ENSMUST00000110221ENSMUST00000125416ENSMUSG00000101568ENSMUST00000187158
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00009J_0001ENSDARG00000005762ENSDART00000027982ENSDART00000134087ENSDART00000137912ENSDARG00000056903ENSDART00000079480ENSDARG00000087428ENSDART00000130511CIL_00009J_0002ENSG00000172167ENST00000305949ENSG00000172172ENST00000306185ENST00000518918ENSG00000187955ENST00000247781ENST00000297848ENST00000309791ENST00000434620ENST00000523142CIL_00009J_0003ENSMUSG00000022369ENSMUST00000022998ENSMUST00000170046ENSMUST00000171146ENSMUSG00000022371ENSMUST00000023053ENSMUST00000110217ENSMUST00000110221ENSMUST00000125416ENSMUSG00000101568ENSMUST00000187158
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000005762 ENSDART00000027982 N/A N/A N/A 1.571±0.00 N/A N/A N/A 0.214±0.00 N/A N/A 0.091±0.00 N/A N/A N/A
ENSDART00000134087 N/A N/A N/A 1.147±0.53 N/A N/A 0.028±0.00 0.362±0.06 0.032±0.00 N/A N/A N/A N/A N/A
ENSDART00000137912 N/A N/A N/A N/A N/A N/A 0.059±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000056903 ENSDART00000079480 N/A N/A N/A 7.127±7.11 N/A N/A 18.896±0.51 12.138±0.00 1.723±0.00 N/A 4.625±0.00 N/A N/A N/A
ENSDARG00000087428 ENSDART00000130511 N/A N/A N/A 263.305±0.00 N/A N/A N/A 108.165±0.00 N/A N/A 4.187±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000172167 ENST00000305949 N/A N/A N/A N/A 1.554±0.00 N/A N/A N/A N/A N/A N/A 2.391±1.13 0.805±0.00 2.540±0.00
ENST00000456899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000172172 ENST00000306185 7.987±0.00 12.994±0.00 3.667±0.00 6.321±0.62 6.026±0.79 10.250±1.34 6.155±1.79 15.094±4.62 4.834±0.00 8.178±0.00 6.389±0.63 19.339±5.98 9.998±2.07 10.525±3.16
ENST00000518696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518918 N/A N/A N/A N/A 8.182±0.00 N/A 9.147±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000520677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000187955 ENST00000247781 3.714±0.00 9.342±0.00 N/A 0.204±0.00 9.501±0.00 6.609±1.44 2.043±0.00 6.349±0.00 1.863±0.00 6.941±0.00 0.919±0.00 23.865±14.89 22.433±3.40 6.891±5.71
ENST00000297848 N/A N/A 2.998±0.00 0.078±0.04 8.292±0.00 2.894±0.50 1.438±0.48 1.582±0.00 15.431±0.00 2.951±0.75 N/A 3.374±1.75 10.071±0.00 0.474±0.00
ENST00000309791 4.244±0.00 6.229±0.00 1.312±0.00 0.301±0.04 4.115±0.02 3.497±1.23 0.820±0.04 1.501±0.61 3.864±3.25 3.222±0.20 1.138±0.00 8.361±6.11 17.492±2.55 3.361±2.86
ENST00000432943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434620 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.673±0.00 N/A N/A N/A N/A
ENST00000440844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523142 N/A N/A N/A N/A N/A N/A N/A 3.119±0.00 N/A N/A N/A N/A N/A N/A
ENST00000537875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022369 ENSMUST00000022998 0.643±0.01 0.435±0.14 1.941±0.25 3.217±0.94 0.828±0.34 0.701±0.26 N/A 1.087±0.13 7.714±3.10 1.395±0.00 N/A 1.923±1.26 3.518±1.75 4.449±1.33
ENSMUST00000166449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170046 1.252±0.00 0.274±0.00 N/A N/A 0.469±0.00 0.620±0.12 N/A N/A N/A N/A N/A 0.751±0.32 N/A 3.136±0.24
ENSMUST00000171146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.786±0.00
ENSMUSG00000022371 ENSMUST00000023053 3.512±1.17 0.966±0.29 6.986±1.18 0.212±0.00 3.920±1.48 2.026±1.20 1.236±0.00 3.129±0.84 1.585±1.43 2.575±0.86 N/A 1.264±0.77 1.389±0.44 N/A
ENSMUST00000110217 N/A 0.496±0.00 N/A N/A 2.211±0.00 N/A N/A N/A N/A N/A N/A 0.978±0.00 N/A N/A
ENSMUST00000110221 9.442±1.89 0.989±0.34 38.321±5.60 0.228±0.15 8.373±2.90 3.272±1.13 1.788±0.55 5.286±1.14 4.735±0.93 3.061±1.34 0.456±0.13 2.758±1.12 3.380±3.00 0.333±0.00
ENSMUST00000125416 15.615±1.28 3.521±0.38 46.011±0.61 0.376±0.14 20.191±4.51 7.613±1.43 3.914±0.53 11.380±0.87 7.057±2.66 5.290±2.08 0.791±0.19 4.351±1.38 3.152±2.24 N/A
ENSMUSG00000101568 ENSMUST00000187158 N/A N/A 0.045±0.04 N/A 0.168±0.04 N/A N/A N/A 0.010±0.00 N/A N/A N/A 0.013±0.00 0.089±0.04

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