C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chloride channel, voltage-sensitive 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000188037 CLCN1 9606 + 7:143316126-143352083 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000343257 CLCN1-001 143316126-143352083 protein_coding
  ENST00000432192 CLCN1-002 143321474-143330895 nonsense_mediated_decay
  ENST00000455478 CLCN1-003 143321474-143330895 nonsense_mediated_decay
  ENST00000495612 CLCN1-004 143321474-143330895 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000343257ENST00000495612
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000343257 0.006±0.00 0.033±0.00 0.023±0.00 0.497±0.00 0.006±0.00 0.012±0.00 0.014±0.00 0.108±0.00 0.051±0.00 2.758±0.00 0.117±0.00 0.035±0.02
ENST00000495612 N/A N/A N/A N/A N/A N/A N/A N/A 0.388±0.00 N/A N/A 0.158±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VM CIL_0006VM_0001 CGP 7:143288215-143352083
CIL_0006VN CIL_0006VN_0001 CGP 7:143316126-143362770

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005247 IEA voltage-gated chloride channel activity
GO:0005254 TAS chloride channel activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006821 IEA chloride transport
GO:0006936 TAS muscle contraction
GO:0016020 IEA membrane
GO:0019227 IEA neuronal action potential propagation
GO:0030554 IEA adenyl nucleotide binding
GO:0034220 TAS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0042383 IEA sarcolemma
GO:0044070 IEA regulation of anion transport
GO:0055085 TAS:IEA transmembrane transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012269 clcn1b chloride channel 1b protein_coding Danio_rerio
ENSDARG00000062084 clcn1a chloride channel 1a protein_coding Danio_rerio
ENSMUSG00000029862 Clcn1 chloride channel 1 protein_coding Mus_musculus

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