C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chloride channel 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029862 Clcn1 10090 + 6:42286685-42315756 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031894 Clcn1-001 42286685-42314656 protein_coding
  ENSMUST00000114684 Clcn1-008 42298900-42315756 protein_coding
  ENSMUST00000163235 Clcn1-009 42310145-42313064 nonsense_mediated_decay
  ENSMUST00000163936 Clcn1-003 42286856-42314178 protein_coding
  ENSMUST00000164091 Clcn1-007 42286767-42314178 nonsense_mediated_decay
  ENSMUST00000165780 Clcn1-006 42286856-42314178 nonsense_mediated_decay
  ENSMUST00000168660 Clcn1-005 42286866-42313957 nonsense_mediated_decay
  ENSMUST00000169024 Clcn1-004 42286856-42314229 nonsense_mediated_decay
  ENSMUST00000169902 Clcn1-010 42312492-42313344 retained_intron
  ENSMUST00000170028 Clcn1-002 42286856-42314178 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000031894ENSMUST00000114684ENSMUST00000163235ENSMUST00000163936ENSMUST00000164091ENSMUST00000168660ENSMUST00000169024ENSMUST00000169902
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000031894 0.030±0.00 N/A N/A 3.611±1.07 N/A N/A 0.160±0.00 N/A 0.096±0.01 34.981±2.53 0.081±0.00 N/A
ENSMUST00000114684 0.033±0.01 0.060±0.01 4.296±0.50 7.544±1.10 0.063±0.00 3.378±0.48 0.029±0.00 0.027±0.01 0.183±0.04 27.167±1.79 0.137±0.09 0.061±0.04
ENSMUST00000163235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.534±0.00 0.289±0.00
ENSMUST00000163936 0.030±0.01 N/A N/A N/A N/A N/A 0.114±0.00 N/A N/A N/A 0.068±0.00 N/A
ENSMUST00000164091 N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A N/A N/A N/A N/A
ENSMUST00000168660 N/A N/A N/A N/A N/A N/A 0.017±0.00 0.052±0.00 N/A N/A 0.217±0.00 0.021±0.00
ENSMUST00000169024 N/A N/A N/A N/A 0.179±0.00 1.218±0.00 N/A N/A N/A N/A N/A 0.025±0.00
ENSMUST00000169902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.186±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VM CIL_0006VM_0002 CGP 6:42264985-42315756
CIL_0006VN CIL_0006VN_0002 CGP 6:42286685-42324643

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005247 IEA voltage-gated chloride channel activity
GO:0006821 IMP chloride transport
GO:0016021 IEA integral component of membrane
GO:0019227 IMP neuronal action potential propagation
GO:0030554 IEA adenyl nucleotide binding
GO:0034220 IEA ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0042383 IDA sarcolemma
GO:0044070 IEA regulation of anion transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012269 clcn1b chloride channel 1b protein_coding Danio_rerio
ENSDARG00000062084 clcn1a chloride channel 1a protein_coding Danio_rerio
ENSG00000188037 CLCN1 chloride channel, voltage-sensitive 1 protein_coding Homo_sapiens

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