C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: late endosomal/lysosomal adaptor, MAPK and MTOR activator 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000188186 LAMTOR4 9606 + 7:100148907-100155944 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341942 LAMTOR4-001 100148907-100154203 protein_coding
  ENST00000441173 LAMTOR4-005 100148938-100154010 protein_coding
  ENST00000460732 LAMTOR4-003 100148913-100154203 protein_coding
  ENST00000466498 LAMTOR4-011 100149359-100153898 protein_coding
  ENST00000468582 LAMTOR4-007 100148978-100154212 protein_coding
  ENST00000473459 LAMTOR4-009 100149357-100154203 protein_coding
  ENST00000474141 LAMTOR4-002 100148912-100154203 protein_coding
  ENST00000474831 LAMTOR4-004 100148934-100154203 nonsense_mediated_decay
  ENST00000488241 LAMTOR4-008 100148994-100154203 protein_coding
  ENST00000488338 LAMTOR4-010 100152680-100154203 retained_intron
  ENST00000490633 LAMTOR4-012 100153486-100155944 protein_coding
  ENST00000494136 LAMTOR4-006 100148938-100149887 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341942ENST00000441173ENST00000468582ENST00000474141ENST00000474831
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341942 61.448±0.00 153.944±0.00 14.697±0.00 53.310±1.24 53.252±32.54 67.327±39.57 22.773±11.86 50.958±29.45 16.283±2.33 51.744±36.83 32.496±0.66 120.478±73.82 111.059±21.01 67.349±12.03
ENST00000441173 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.802±0.00 N/A N/A N/A N/A
ENST00000468582 N/A N/A N/A 20.046±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.541±0.00
ENST00000474141 N/A N/A N/A N/A N/A N/A 15.215±0.00 44.994±0.00 N/A 34.304±0.00 N/A N/A N/A N/A
ENST00000474831 N/A N/A N/A N/A N/A N/A N/A N/A 8.849±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0002JK CIL_0002JK_0001 CGP 7:100148907-100158715

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005085 IDA guanyl-nucleotide exchange factor activity
GO:0005764 IDA lysosome
GO:0008361 IMP regulation of cell size
GO:0032008 IMP positive regulation of TOR signaling
GO:0032947 IDA protein complex scaffold
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043547 IDA positive regulation of GTPase activity
GO:0061462 IMP protein localization to lysosome
GO:0071230 IMP cellular response to amino acid stimulus
GO:0071986 IDA Ragulator complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045542 LAMTOR4 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 protein_coding Danio_rerio
ENSMUSG00000050552 Lamtor4 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 protein_coding Mus_musculus

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