C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: H2A histone family, member X
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000188486 H2AFX 9606 - 11:119093854-119095467 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000375167 H2AFX-002 119093879-119095449 nonsense_mediated_decay
  ENST00000530167 H2AFX-001 119093854-119095467 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375167ENST00000530167
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375167 3.974±0.00 9.540±0.00 N/A 7.156±5.33 3.792±0.00 5.524±2.17 2.604±0.00 9.568±0.00 0.730±0.67 4.955±4.48 1.319±0.50 9.698±7.05 12.150±4.06 16.808±1.40
ENST00000530167 6.120±0.00 6.744±0.00 0.182±0.00 6.250±4.54 3.858±2.05 8.347±0.00 2.043±0.00 6.172±0.00 1.408±1.02 12.183±0.00 5.082±0.00 23.069±12.71 52.333±15.59 9.106±1.63

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000077 IDA DNA damage checkpoint
GO:0000724 TAS double-strand break repair via homologous recombination
GO:0000781 IDA chromosome, telomeric region
GO:0000785 IEA chromatin
GO:0000786 IEA nucleosome
GO:0000790 IEA nuclear chromatin
GO:0000794 IEA condensed nuclear chromosome
GO:0001673 IEA male germ cell nucleus
GO:0001741 IEA XY body
GO:0003677 NAS:IEA DNA binding
GO:0003684 IEA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005657 IEA replication fork
GO:0005694 IEA chromosome
GO:0006281 TAS DNA repair
GO:0006302 NAS double-strand break repair
GO:0006334 NAS nucleosome assembly
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0007283 IEA spermatogenesis
GO:0010212 NAS response to ionizing radiation
GO:0019899 IPI enzyme binding
GO:0035861 IDA site of double-strand break
GO:0042393 IPI histone binding
GO:0043565 IEA sequence-specific DNA binding
GO:0045739 NAS positive regulation of DNA repair
GO:0046982 IEA protein heterodimerization activity
GO:0051321 IEA meiotic cell cycle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068995 zgc:101846 zgc:101846 protein_coding Danio_rerio
ENSDARG00000070286 si:ch211-113a14.19 si:ch211-113a14.19 protein_coding Danio_rerio
ENSDARG00000074260 si:ch211-113a14.19 si:ch211-113a14.19 protein_coding Danio_rerio
ENSDARG00000075220 si:ch211-113a14.19 si:ch211-113a14.19 protein_coding Danio_rerio
ENSDARG00000075379 si:ch211-113a14.19 si:ch211-113a14.19 protein_coding Danio_rerio
ENSDARG00000076507 protein_coding Danio_rerio
ENSDARG00000086552 protein_coding Danio_rerio
ENSDARG00000086604 si:ch211-113a14.19 si:ch211-113a14.19 protein_coding Danio_rerio
ENSDARG00000087451 protein_coding Danio_rerio
ENSDARG00000088291 protein_coding Danio_rerio
ENSDARG00000088686 protein_coding Danio_rerio
ENSDARG00000091205 si:ch211-113a14.19 si:ch211-113a14.19 protein_coding Danio_rerio
ENSMUSG00000049932 H2afx H2A histone family, member X protein_coding Mus_musculus

Loading