C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: H2A histone family, member X
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000049932 H2afx 10090 + 9:44334694-44336077 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000052686 H2afx-001 44334694-44336077 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052686
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052686 27.171±14.38 32.078±4.35 11.915±1.62 71.798±48.34 23.893±12.50 48.130±5.34 5.452±0.63 10.852±1.60 85.544±87.79 15.408±1.16 4.196±0.88 75.686±34.15 65.963±37.09 40.496±19.56

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000077 IEA DNA damage checkpoint
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0000781 IEA chromosome, telomeric region
GO:0000785 IDA chromatin
GO:0000786 IEA nucleosome
GO:0000790 IDA nuclear chromatin
GO:0000794 IDA condensed nuclear chromosome
GO:0001673 IDA male germ cell nucleus
GO:0001741 IDA XY body
GO:0003684 IDA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005634 ISO nucleus
GO:0005654 TAS nucleoplasm
GO:0005657 IDA replication fork
GO:0005694 IDA chromosome
GO:0006281 IMP DNA repair
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007283 IMP spermatogenesis
GO:0019899 IEA enzyme binding
GO:0035861 IDA site of double-strand break
GO:0042393 IEA histone binding
GO:0046982 IEA protein heterodimerization activity
GO:0051321 IEA meiotic cell cycle
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068995 zgc:101846 zgc:101846 protein_coding Danio_rerio
ENSDARG00000070286 si:ch211-113a14.19 si:ch211-113a14.19 protein_coding Danio_rerio
ENSDARG00000074260 si:ch211-113a14.19 si:ch211-113a14.19 protein_coding Danio_rerio
ENSDARG00000075220 si:ch211-113a14.19 si:ch211-113a14.19 protein_coding Danio_rerio
ENSDARG00000075379 si:ch211-113a14.19 si:ch211-113a14.19 protein_coding Danio_rerio
ENSDARG00000076507 protein_coding Danio_rerio
ENSDARG00000086552 protein_coding Danio_rerio
ENSDARG00000086604 si:ch211-113a14.19 si:ch211-113a14.19 protein_coding Danio_rerio
ENSDARG00000087451 protein_coding Danio_rerio
ENSDARG00000088291 protein_coding Danio_rerio
ENSDARG00000088686 protein_coding Danio_rerio
ENSDARG00000091205 si:ch211-113a14.19 si:ch211-113a14.19 protein_coding Danio_rerio
ENSG00000188486 H2AFX H2A histone family, member X protein_coding Homo_sapiens

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