C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H2A histone family, member X
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000530167 H2AFX-001 ENSG00000188486 9606 - 11:119093854-119095467 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000530167
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000530167 6.120±0.00 6.744±0.00 0.182±0.00 6.250±4.54 3.858±2.05 8.347±0.00 2.043±0.00 6.172±0.00 1.408±1.02 12.183±0.00 5.082±0.00 23.069±12.71 52.333±15.59 9.106±1.63

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000077 IDA DNA damage checkpoint
GO:0000724 TAS double-strand break repair via homologous recombination
GO:0000781 IDA chromosome, telomeric region
GO:0000785 IEA chromatin
GO:0000786 IEA nucleosome
GO:0000790 IEA nuclear chromatin
GO:0000794 IEA condensed nuclear chromosome
GO:0001673 IEA male germ cell nucleus
GO:0001741 IEA XY body
GO:0003677 NAS:IEA DNA binding
GO:0003684 IEA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005657 IEA replication fork
GO:0005694 IEA chromosome
GO:0006281 TAS DNA repair
GO:0006302 NAS double-strand break repair
GO:0006334 NAS nucleosome assembly
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0007283 IEA spermatogenesis
GO:0010212 NAS response to ionizing radiation
GO:0019899 IPI enzyme binding
GO:0035861 IDA site of double-strand break
GO:0042393 IPI histone binding
GO:0043565 IEA sequence-specific DNA binding
GO:0045739 NAS positive regulation of DNA repair
GO:0046982 IEA protein heterodimerization activity
GO:0051321 IEA meiotic cell cycle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052686 H2afx-001 protein_coding Mus_musculus 0 739
ENSMUST00000070124 Hist1h2ai-001 protein_coding Mus_musculus 0 488
ENSMUST00000090776 Hist1h2ad-001 protein_coding Mus_musculus 0 483
ENSMUST00000091741 Hist1h2ag-001 protein_coding Mus_musculus 0 483
ENSMUST00000091742 Hist1h2ah-001 protein_coding Mus_musculus 0 483
ENSMUST00000081342 Hist1h2ap-001 protein_coding Mus_musculus 0 483
ENSMUST00000090782 Hist2h2ac-001 protein_coding Mus_musculus 0 481
ENSMUST00000091745 Hist1h2ao-001 protein_coding Mus_musculus 0 479
ENSMUST00000091751 Hist1h2an-001 protein_coding Mus_musculus 0 477
ENSMUST00000073261 Hist1h2af-001 protein_coding Mus_musculus 0 477
ENSMUST00000074556 H2afj-001 protein_coding Mus_musculus 0 470
ENSMUST00000078756 Hist2h2aa2-001 protein_coding Mus_musculus 0 468
ENSMUST00000074976 Hist2h2aa1-001 protein_coding Mus_musculus 0 468
ENSMUST00000078369 Hist1h2ab-001 protein_coding Mus_musculus 0 468
ENSMUST00000102969 Hist1h2ae-001 protein_coding Mus_musculus 0 466
ENSMUST00000171127 Hist1h2ac-001 protein_coding Mus_musculus 0 466
ENSMUST00000091708 Hist1h2al-201 protein_coding Mus_musculus 0 462
ENSMUST00000091710 Hist1h2aj-001 unprocessed_pseudogene Mus_musculus 0 460
ENSMUST00000074752 Hist1h2ak-001 protein_coding Mus_musculus 0 444
ENSMUST00000108817 Hist3h2a-001 protein_coding Mus_musculus 0 377
ENSMUST00000047697 Trim17-002 protein_coding Mus_musculus 0 377
ENSMUST00000072391 Hist1h2aa-001 protein_coding Mus_musculus 0 342
ENSDART00000102972 protein_coding Danio_rerio 0 327
ENSDART00000155501 protein_coding Danio_rerio 0 327
ENSDART00000073454 protein_coding Danio_rerio 0 311
ENSDART00000126259 protein_coding Danio_rerio 0 303
ENSDART00000129969 si:ch211-113a14.19-001 protein_coding Danio_rerio 0 300
ENSDART00000110632 protein_coding Danio_rerio 0 300
ENSDART00000099859 protein_coding Danio_rerio 0 300
ENSDART00000103013 si:ch211-113a14.19-001 protein_coding Danio_rerio 0 300
ENSMUST00000118168 Gm11336-001 unprocessed_pseudogene Mus_musculus 0 296
ENSDART00000103006 protein_coding Danio_rerio 0 289
ENSDART00000147978 protein_coding Danio_rerio 0 289
ENSDART00000108936 protein_coding Danio_rerio 0 283
ENSDART00000155060 protein_coding Danio_rerio 0 283
ENSDART00000073402 protein_coding Danio_rerio 0 283
ENSDART00000115109 protein_coding Danio_rerio 0 283
ENSDART00000129403 protein_coding Danio_rerio 0 283
ENSDART00000129239 protein_coding Danio_rerio 0 281
ENSDART00000114908 protein_coding Danio_rerio 0 272

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