C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glycine receptor, alpha 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000188828 GLRA4 9606 - X:103707224-103728655 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000372617 GLRA4-001 103707224-103728624 protein_coding
  ENST00000436213 GLRA4-003 103707300-103728655 nonsense_mediated_decay
  ENST00000469567 GLRA4-002 103719514-103722211 processed_transcript
  ENST00000480725 GLRA4-004 103718574-103728624 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastMuscleOvaryPlacentaENST00000372617ENST00000436213ENST00000480725
Transcript ID Adrenal Brain Breast Muscle Ovary Placenta
ENST00000372617 N/A 0.352±0.00 0.029±0.00 N/A 0.067±0.00 0.028±0.00
ENST00000436213 0.043±0.00 N/A 0.045±0.00 0.055±0.00 N/A N/A
ENST00000480725 N/A 0.076±0.00 N/A N/A 0.069±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004U4 CIL_0004U4_0001 CGP X:103675496-103728655

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005887 IEA integral component of plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016594 IEA glycine binding
GO:0022824 IEA transmitter-gated ion channel activity
GO:0030054 IEA cell junction
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006865 glra4a glycine receptor, alpha 4a protein_coding Danio_rerio
ENSDARG00000058103 glra4b glycine receptor, alpha 4b protein_coding Danio_rerio
ENSMUSG00000018595 Glra4 glycine receptor, alpha 4 subunit protein_coding Mus_musculus

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