C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycine receptor, alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372617 GLRA4-001 ENSG00000188828 9606 - X:103707224-103728624 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastOvaryPlacentaENST00000372617
Transcript ID Brain Breast Ovary Placenta
ENST00000372617 0.352±0.00 0.029±0.00 0.067±0.00 0.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004U4 CIL_0004U4_0001 CGP X:103675496-103728655

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005887 IEA integral component of plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016594 IEA glycine binding
GO:0022824 IEA transmitter-gated ion channel activity
GO:0030054 IEA cell junction
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018739 Glra4-001 protein_coding Mus_musculus 0 2019
ENSMUST00000154833 Glra4-002 retained_intron Mus_musculus 0 1509
ENSMUST00000075603 Glra1-003 protein_coding Mus_musculus 0 745
ENSMUST00000102716 Glra1-002 protein_coding Mus_musculus 0 745
ENSMUST00000108853 Glra1-001 protein_coding Mus_musculus 0 680
ENSDART00000009777 GLRA3-201 protein_coding Danio_rerio 0 409
ENSDART00000108535 GABRB1-201 protein_coding Danio_rerio 0.00000000000004 84
ENSDART00000087300 gabrb3-001 protein_coding Danio_rerio 0.000000000002 79

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