C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 39 (zinc transporter), member 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196950 SLC39A10 9606 + 2:195575977-195737702 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000359634 SLC39A10-001 195657128-195737702 protein_coding
  ENST00000409086 SLC39A10-002 195656747-195737702 protein_coding
  ENST00000412905 SLC39A10-012 195657136-195680158 protein_coding
  ENST00000418005 SLC39A10-009 195657449-195680433 protein_coding
  ENST00000430412 SLC39A10-003 195657128-195737702 nonsense_mediated_decay
  ENST00000444421 SLC39A10-006 195656911-195706676 nonsense_mediated_decay
  ENST00000458054 SLC39A10-007 195575977-195680420 protein_coding
  ENST00000464301 SLC39A10-013 195657235-195658587 processed_transcript
  ENST00000465851 SLC39A10-011 195680477-195717383 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359634ENST00000409086ENST00000418005ENST00000430412ENST00000465851
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359634 2.363±0.00 2.071±0.00 2.787±0.00 19.069±6.19 2.785±0.14 1.521±0.02 0.995±0.10 1.285±0.60 1.261±1.10 2.837±0.80 0.209±0.00 4.909±4.62 1.115±0.12 1.118±0.00
ENST00000409086 N/A N/A N/A N/A N/A N/A N/A 0.563±0.00 N/A N/A N/A N/A N/A 1.958±0.08
ENST00000418005 N/A N/A N/A N/A N/A N/A N/A 1.219±0.00 N/A N/A N/A N/A N/A N/A
ENST00000430412 N/A 1.386±0.00 N/A 3.839±1.95 1.702±0.00 0.498±0.00 N/A 1.081±0.92 N/A 0.524±0.00 0.080±0.00 6.457±5.15 3.006±1.61 1.354±0.00
ENST00000465851 N/A N/A N/A N/A 2.270±0.00 1.750±0.00 N/A N/A 1.068±0.00 N/A 0.642±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042P CIL_00042P_0002 CGP 2:195575977-196068812

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006829 IEA zinc ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030001 IEA metal ion transport
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 TAS:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005823 slc39a10 solute carrier family 39 (zinc transporter), member 10 protein_coding Danio_rerio
ENSMUSG00000025986 Slc39a10 solute carrier family 39 (zinc transporter), member 10 protein_coding Mus_musculus

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