C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein A/B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000197451 HNRNPAB 9606 + 5:178204507-178211180 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355836 HNRNPAB-003 178204539-178211142 protein_coding
  ENST00000358344 HNRNPAB-001 178204507-178211163 protein_coding
  ENST00000504796 HNRNPAB-009 178205568-178206866 retained_intron
  ENST00000504898 HNRNPAB-008 178204571-178211142 protein_coding
  ENST00000506259 HNRNPAB-004 178204548-178211149 protein_coding
  ENST00000506339 HNRNPAB-005 178204533-178211155 protein_coding
  ENST00000514633 HNRNPAB-002 178204541-178211119 protein_coding
  ENST00000515193 HNRNPAB-006 178204544-178211155 protein_coding
  ENST00000615932 HNRNPAB-201 178204823-178211180 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355836ENST00000358344ENST00000504796ENST00000504898ENST00000506339ENST00000514633ENST00000615932
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355836 16.969±0.00 26.603±0.00 N/A 5.207±2.95 33.242±0.00 6.326±0.00 N/A 16.592±0.00 3.595±0.00 N/A N/A 35.190±12.75 29.303±6.66 12.980±0.00
ENST00000358344 14.200±0.00 N/A N/A N/A 9.386±0.00 11.148±1.45 2.643±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000504796 N/A N/A N/A N/A 16.766±0.00 N/A N/A N/A N/A N/A N/A 86.749±0.00 N/A N/A
ENST00000504898 28.325±0.00 38.391±0.00 N/A 13.708±0.00 30.450±0.00 30.337±0.00 0.969±0.00 23.196±19.70 35.743±0.00 57.054±0.00 25.120±23.34 24.972±17.86 48.867±11.13 37.983±0.00
ENST00000506339 N/A N/A 2.738±0.00 2.143±0.00 N/A N/A N/A N/A N/A N/A 2.388±0.00 N/A N/A N/A
ENST00000514633 13.830±0.00 22.735±0.00 N/A 11.658±0.00 N/A 11.473±0.00 N/A 17.821±0.00 16.797±0.00 4.473±0.00 N/A N/A N/A N/A
ENST00000615932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 61.429±7.37 53.666±0.00 76.085±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0001837 ISS epithelial to mesenchymal transition
GO:0003676 IEA nucleic acid binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0003723 TAS RNA binding
GO:0003729 TAS mRNA binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0030529 IDA ribonucleoprotein complex
GO:0043565 ISS sequence-specific DNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0045893 ISS positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007960 hnrnpaba heterogeneous nuclear ribonucleoprotein A/Ba protein_coding Danio_rerio
ENSDARG00000017568 hnrnpabb heterogeneous nuclear ribonucleoprotein A/Bb protein_coding Danio_rerio
ENSMUSG00000020358 Hnrnpab heterogeneous nuclear ribonucleoprotein A/B protein_coding Mus_musculus

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