C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A/B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000504898 HNRNPAB-008 ENSG00000197451 9606 + 5:178204571-178211142 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000504898
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000504898 28.325±0.00 38.391±0.00 13.708±0.00 30.450±0.00 30.337±0.00 0.969±0.00 23.196±19.70 35.743±0.00 57.054±0.00 25.120±23.34 24.972±17.86 48.867±11.13 37.983±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001837 ISS epithelial to mesenchymal transition
GO:0003676 IEA nucleic acid binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0003723 TAS RNA binding
GO:0003729 TAS mRNA binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0030529 IDA ribonucleoprotein complex
GO:0043565 ISS sequence-specific DNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0045893 ISS positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109103 Hnrnpab-003 protein_coding Mus_musculus 0 1520
ENSMUST00000101249 Hnrnpab-002 protein_coding Mus_musculus 0 1144
ENSMUST00000074669 Hnrnpab-001 protein_coding Mus_musculus 0 941
ENSMUST00000169995 Phykpl-008 retained_intron Mus_musculus 0 291
ENSMUST00000020625 Phykpl-004 protein_coding Mus_musculus 0 241

Loading