C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000197479 PCDHB11 9606 + 5:141199582-141203779 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354757 PCDHB11-001 141199582-141203779 protein_coding
  ENST00000624887 PCDHB11-002 141199610-141202279 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354757ENST00000624887
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354757 2.140±0.00 0.546±0.00 0.579±0.00 1.007±0.05 1.277±0.16 0.537±0.27 0.443±0.02 0.301±0.29 1.181±0.00 0.964±0.47 0.325±0.00 1.730±1.16 0.221±0.02 1.650±0.00
ENST00000624887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.735±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000A CGP 5:141187319-141203779
CIL_00062S CIL_00062S_000F CGP 5:141199582-141212571

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007399 TAS nervous system development
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSMUSG00000043313 Pcdhb19 protocadherin beta 19 protein_coding Mus_musculus

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