C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 19
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043313 Pcdhb19 10090 + 18:37496997-37504127 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000059571 Pcdhb19-201 37496997-37504127 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059571
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059571 0.717±0.30 1.697±0.20 0.336±0.20 0.734±0.25 0.462±0.05 0.615±0.09 0.351±0.03 0.204±0.05 0.030±0.02 0.889±0.07 0.052±0.01 1.225±1.00 0.024±0.02 0.028±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000U CGP 18:37489465-37504127
CIL_00062S CIL_00062S_000G CGP 18:37496997-37507658

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSG00000120328 PCDHB12 protocadherin beta 12 protein_coding Homo_sapiens
ENSG00000197479 PCDHB11 protocadherin beta 11 protein_coding Homo_sapiens

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