C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354757 PCDHB11-001 ENSG00000197479 9606 + 5:141199582-141203779 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354757
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354757 2.140±0.00 0.546±0.00 0.579±0.00 1.007±0.05 1.277±0.16 0.537±0.27 0.443±0.02 0.301±0.29 1.181±0.00 0.964±0.47 0.325±0.00 1.730±1.16 0.221±0.02 1.650±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000A CGP 5:141187319-141203779
CIL_00062S CIL_00062S_000F CGP 5:141199582-141212571

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007399 TAS nervous system development
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052387 Pcdhb14-201 protein_coding Mus_musculus 0 924
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0 902
ENSMUST00000056712 Pcdhb4-201 protein_coding Mus_musculus 0 894
ENSMUST00000056522 Pcdhb2-201 protein_coding Mus_musculus 0 887
ENSMUST00000053856 Pcdhb17-201 protein_coding Mus_musculus 0 865
ENSMUST00000051754 Pcdhb3-201 protein_coding Mus_musculus 0 863
ENSMUST00000050034 Pcdhb15-201 protein_coding Mus_musculus 0 822
ENSMUST00000137650 Trpm1-014 protein_coding Mus_musculus 0.00002 57

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