C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mitochondrial ribosomal protein L42
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198015 MRPL42 9606 + 12:93467488-93516213 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000358678 MRPL42-002 93467518-93502661 nonsense_mediated_decay
  ENST00000393128 MRPL42-003 93467517-93502652 protein_coding
  ENST00000547098 MRPL42-006 93467518-93488472 protein_coding
  ENST00000548545 MRPL42-005 93469214-93487897 protein_coding
  ENST00000549561 MRPL42-007 93469189-93502864 nonsense_mediated_decay
  ENST00000549982 MRPL42-001 93467488-93516213 protein_coding
  ENST00000551396 MRPL42-008 93467540-93501385 nonsense_mediated_decay
  ENST00000552217 MRPL42-004 93467516-93501576 protein_coding
  ENST00000552326 MRPL42-010 93467517-93501291 processed_transcript
  ENST00000552938 MRPL42-009 93500747-93502621 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358678ENST00000393128ENST00000548545ENST00000549561ENST00000549982ENST00000552217ENST00000552326ENST00000552938
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358678 N/A N/A N/A N/A N/A 5.391±0.00 N/A 1.815±0.00 N/A N/A 0.861±0.00 N/A N/A N/A
ENST00000393128 3.753±0.00 3.529±0.00 4.120±0.00 N/A 3.508±1.01 3.967±0.00 5.513±0.00 5.675±4.09 4.270±1.43 3.823±0.94 2.081±0.00 5.135±1.62 3.817±0.96 4.526±1.35
ENST00000548545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.132±0.00 N/A 20.098±0.00
ENST00000549561 N/A N/A N/A N/A N/A 9.831±0.00 6.282±0.00 N/A N/A N/A 1.305±0.00 7.397±0.00 3.226±0.38 N/A
ENST00000549982 1.203±0.00 0.522±0.00 0.771±0.00 2.327±0.61 0.757±0.11 0.699±0.00 0.830±0.16 0.530±0.00 0.637±0.11 N/A 0.116±0.00 1.233±0.44 0.270±0.08 0.873±0.25
ENST00000552217 N/A N/A N/A N/A N/A 3.269±0.00 N/A 1.928±0.00 N/A 2.668±0.00 N/A 12.823±4.43 4.347±1.76 9.711±0.48
ENST00000552326 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.939±0.00 3.777±0.00 N/A N/A 7.525±0.00
ENST00000552938 N/A N/A N/A N/A N/A N/A N/A N/A 3.296±0.00 5.427±0.00 N/A 7.474±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X9 CIL_0005X9_0002 CGP 12:93405673-93516213

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 NAS structural constituent of ribosome
GO:0005739 IDA mitochondrion
GO:0005763 IDA mitochondrial small ribosomal subunit
GO:0005886 IDA plasma membrane
GO:0006412 NAS translation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079391 MRPL42 mitochondrial ribosomal protein L42 protein_coding Danio_rerio
ENSMUSG00000062981 Mrpl42 mitochondrial ribosomal protein L42 protein_coding Mus_musculus

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