C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 62kDa C-terminal like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198088 NUP62CL 9606 - X:107123427-107206433 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000372466 NUP62CL-001 107123427-107206433 protein_coding
  ENST00000421752 NUP62CL-003 107153292-107206433 protein_coding
  ENST00000432145 NUP62CL-004 107124148-107154234 protein_coding
  ENST00000484614 NUP62CL-002 107123472-107206433 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000372466ENST00000421752ENST00000432145ENST00000484614
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000372466 0.015±0.00 N/A N/A 0.054±0.00 N/A 0.148±0.00 0.211±0.00 0.684±0.41 N/A N/A 1.619±1.35 0.109±0.08 0.824±0.00
ENST00000421752 0.104±0.00 N/A N/A N/A N/A N/A N/A 0.489±0.00 N/A N/A N/A 0.077±0.00 N/A
ENST00000432145 N/A N/A 1.907±0.00 N/A 0.046±0.00 0.810±0.00 N/A 0.474±0.00 N/A 0.253±0.00 2.261±1.28 0.077±0.02 2.258±0.00
ENST00000484614 N/A 0.101±0.00 N/A 0.107±0.00 0.192±0.06 0.253±0.19 0.060±0.00 N/A 0.234±0.03 0.565±0.00 0.122±0.00 0.050±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AD CIL_0006AD_0001 CGP X:107064420-107206433
CIL_0006JD CIL_0006JD_0001 CGP X:107123427-107244243

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005643 IEA nuclear pore
GO:0015031 IEA protein transport
GO:0017056 IEA structural constituent of nuclear pore

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020527 nup62l nucleoporin 62 like protein_coding Danio_rerio
ENSMUSG00000072944 Nup62cl nucleoporin 62 C-terminal like protein_coding Mus_musculus

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