C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 62 C-terminal like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000072944 Nup62cl 10090 - X:140006805-140062712 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000101212 Nup62cl-001 140006805-140062568 protein_coding
  ENSMUST00000124075 Nup62cl-003 140034790-140062551 protein_coding
  ENSMUST00000125678 Nup62cl-005 140028209-140062580 protein_coding
  ENSMUST00000133780 Nup62cl-002 140027609-140062712 protein_coding
  ENSMUST00000154385 Nup62cl-004 140022062-140062293 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000101212ENSMUST00000124075ENSMUST00000125678ENSMUST00000133780ENSMUST00000154385
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000101212 0.118±0.07 1.153±0.43 1.484±0.30 0.150±0.10 0.081±0.06 0.060±0.02 0.047±0.04 0.146±0.07 0.338±0.26 0.175±0.02 0.020±0.00 0.634±0.23 41.205±29.09 3.519±1.06
ENSMUST00000124075 N/A N/A N/A N/A N/A 0.208±0.00 N/A 0.622±0.00 N/A 0.212±0.00 N/A 1.390±0.00 N/A N/A
ENSMUST00000125678 1.778±0.81 8.030±2.02 8.544±0.60 1.046±0.09 0.811±0.38 0.244±0.07 N/A 1.856±1.18 1.825±0.94 1.228±0.73 N/A 7.157±2.76 253.398±34.78 33.527±9.46
ENSMUST00000133780 0.381±0.12 1.281±0.67 N/A 0.534±0.00 0.139±0.05 N/A 0.155±0.04 0.248±0.08 0.321±0.10 0.266±0.11 N/A 1.552±1.07 N/A 3.599±0.98
ENSMUST00000154385 N/A 2.047±0.40 N/A 0.018±0.00 N/A N/A N/A N/A 0.194±0.00 N/A N/A 0.271±0.00 229.230±24.30 1.954±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AD CIL_0006AD_0002 CGP X:139889511-140062712
CIL_0006JD CIL_0006JD_0002 CGP X:140006805-140106797

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005643 IEA nuclear pore
GO:0008150 ND biological_process
GO:0017056 IEA structural constituent of nuclear pore

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020527 nup62l nucleoporin 62 like protein_coding Danio_rerio
ENSG00000198088 NUP62CL nucleoporin 62kDa C-terminal like protein_coding Homo_sapiens

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