C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chondroitin sulfate synthase 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198108 CHSY3 9606 + 5:129904472-130186634 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000305031 CHSY3-001 129904472-130186634 protein_coding
  ENST00000507545 CHSY3-002 129908087-130184502 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000305031ENST00000507545
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000305031 1.634±0.00 0.294±0.00 1.405±0.82 1.068±0.00 0.730±0.00 0.152±0.04 0.412±0.10 1.059±0.08 0.376±0.11 0.203±0.00 0.443±0.13 1.156±0.48 0.562±0.21
ENST00000507545 N/A N/A 4.118±0.00 1.828±0.00 1.049±0.17 1.167±0.00 N/A 3.194±0.00 2.099±0.00 3.369±0.00 N/A N/A 0.582±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CU CIL_0006CU_0002 CGP 5:129748079-130186634

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0008376 IEA acetylgalactosaminyltransferase activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 TAS chondroitin sulfate biosynthetic process
GO:0032580 IEA Golgi cisterna membrane
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0047238 IEA glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 IEA N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069472 chsy3 chondroitin sulfate synthase 3 protein_coding Danio_rerio
ENSMUSG00000058152 Chsy3 chondroitin sulfate synthase 3 protein_coding Mus_musculus

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