C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin sulfate synthase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000305031 CHSY3-001 ENSG00000198108 9606 + 5:129904472-130186634 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000305031
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000305031 1.634±0.00 0.294±0.00 1.405±0.82 1.068±0.00 0.730±0.00 0.152±0.04 0.412±0.10 1.059±0.08 0.376±0.11 0.203±0.00 0.443±0.13 1.156±0.48 0.562±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CU CIL_0006CU_0002 CGP 5:129748079-130186634

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0008376 IEA acetylgalactosaminyltransferase activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 TAS chondroitin sulfate biosynthetic process
GO:0032580 IEA Golgi cisterna membrane
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0047238 IEA glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 IEA N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080721 Chsy3-201 protein_coding Mus_musculus 0 3007

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