C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0006CU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000078922-ENSDARG00000069472 CGP 7955 10:16535486-16699699
GeneTranscriptPositionBiotype
ENSDARG00000069472 (chsy3)
chondroitin sulfate synthase 3
ENSDART00000101142 (chsy3-201) 16543642-16699699 protein_coding
ENSDARG00000078922 ()
ENSDART00000112039 () 16535486-16538116 protein_coding
CIL_0006CU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000186367-ENSG00000198108 CGP 9606 5:129748079-130186634
GeneTranscriptPositionBiotype
ENSG00000186367 (KIAA1024L)
KIAA1024-like
ENST00000564719 (KIAA1024L-001) 129748079-129766732 protein_coding
ENSG00000198108 (CHSY3)
chondroitin sulfate synthase 3
ENST00000305031 (CHSY3-001) 129904472-130186634 protein_coding
ENST00000507545 (CHSY3-002) 129908087-130184502 processed_transcript
ENSG00000199455 (RNA5SP191)
RNA, 5S ribosomal pseudogene 191
ENST00000362585 (RNA5SP191-201) 130114409-130114510 rRNA
ENSG00000221562 (RNU6ATAC10P)
RNA, U6atac small nuclear 10, pseudogene
ENST00000408635 (RNU6ATAC10P-201) 129974891-129975001 snRNA
ENSG00000248610 (HSPA8P4)
heat shock 70kDa protein 8 pseudogene 4
ENST00000511877 (HSPA8P4-001) 130140031-130141950 processed_pseudogene
CIL_0006CU_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050875-ENSMUSG00000058152 CGP 10090 18:59062248-59410446
GeneTranscriptPositionBiotype
ENSMUSG00000050875 (A730017C20Rik)
RIKEN cDNA A730017C20 gene
ENSMUST00000058633 (A730017C20Rik-001) 59062462-59076962 protein_coding
ENSMUST00000117064 (A730017C20Rik-002) 59062248-59076962 nonsense_mediated_decay
ENSMUST00000118510 (A730017C20Rik-004) 59062494-59075824 protein_coding
ENSMUST00000154125 (A730017C20Rik-003) 59062510-59074664 retained_intron
ENSMUST00000165666 (A730017C20Rik-005) 59062282-59076962 protein_coding
ENSMUST00000175830 (A730017C20Rik-007) 59062511-59075931 protein_coding
ENSMUST00000175897 (A730017C20Rik-006) 59062466-59075621 protein_coding
ENSMUSG00000058152 (Chsy3)
chondroitin sulfate synthase 3
ENSMUST00000080721 (Chsy3-201) 59175401-59410446 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CU_0001ENSDARG00000069472ENSDART00000101142ENSDARG00000078922ENSDART00000112039CIL_0006CU_0002ENSG00000186367ENST00000564719ENSG00000198108ENST00000305031ENST00000507545ENSG00000199455ENST00000362585ENSG00000221562ENST00000408635ENSG00000248610ENST00000511877CIL_0006CU_0003ENSMUSG00000050875ENSMUST00000058633ENSMUST00000117064ENSMUST00000118510ENSMUST00000154125ENSMUST00000165666ENSMUST00000175830ENSMUST00000175897ENSMUSG00000058152ENSMUST00000080721
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CU_0001ENSDARG00000069472ENSDART00000101142ENSDARG00000078922ENSDART00000112039CIL_0006CU_0002ENSG00000186367ENST00000564719ENSG00000198108ENST00000305031ENST00000507545ENSG00000199455ENST00000362585ENSG00000221562ENST00000408635ENSG00000248610ENST00000511877CIL_0006CU_0003ENSMUSG00000050875ENSMUST00000058633ENSMUST00000117064ENSMUST00000118510ENSMUST00000154125ENSMUST00000165666ENSMUST00000175830ENSMUST00000175897ENSMUSG00000058152ENSMUST00000080721
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000069472 ENSDART00000101142 N/A N/A N/A 3.702±2.03 N/A N/A 2.432±1.17 0.450±0.32 0.064±0.00 N/A 1.509±0.00 N/A N/A N/A
ENSDARG00000078922 ENSDART00000112039 N/A N/A N/A N/A N/A N/A 1.884±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000186367 ENST00000564719 0.061±0.00 0.078±0.00 N/A 0.062±0.00 0.092±0.00 0.045±0.00 0.030±0.00 0.099±0.00 0.011±0.01 0.030±0.00 N/A 0.021±0.01 0.040±0.00 0.060±0.01
ENSG00000198108 ENST00000305031 1.634±0.00 0.294±0.00 N/A 1.405±0.82 1.068±0.00 0.730±0.00 0.152±0.04 0.412±0.10 1.059±0.08 0.376±0.11 0.203±0.00 0.443±0.13 1.156±0.48 0.562±0.21
ENST00000507545 N/A N/A N/A 4.118±0.00 1.828±0.00 1.049±0.17 1.167±0.00 N/A 3.194±0.00 2.099±0.00 3.369±0.00 N/A N/A 0.582±0.00
ENSG00000199455 ENST00000362585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.061±0.00 N/A N/A
ENSG00000221562 ENST00000408635 N/A N/A N/A 0.264±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.470±0.00 N/A
ENSG00000248610 ENST00000511877 0.045±0.00 0.052±0.00 N/A 0.320±0.30 0.191±0.13 0.184±0.00 0.080±0.07 0.011±0.00 0.093±0.04 0.122±0.12 0.005±0.00 0.139±0.15 0.060±0.03 0.041±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000050875 ENSMUST00000058633 0.424±0.43 0.912±0.36 0.155±0.05 26.970±12.44 0.059±0.02 0.403±0.18 0.051±0.02 0.151±0.06 0.085±0.09 0.179±0.06 N/A 2.504±0.99 0.077±0.02 1.066±0.69
ENSMUST00000117064 N/A N/A N/A 5.770±0.00 N/A N/A N/A 0.093±0.01 N/A 0.186±0.00 N/A N/A 0.013±0.00 N/A
ENSMUST00000118510 N/A N/A N/A N/A N/A 0.303±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154125 0.011±0.00 0.099±0.02 N/A 4.024±0.00 0.041±0.02 0.079±0.00 0.075±0.00 0.013±0.00 0.005±0.00 0.046±0.01 N/A 0.336±0.03 0.009±0.00 N/A
ENSMUST00000165666 N/A 1.056±0.20 0.065±0.00 N/A 0.037±0.00 N/A 0.126±0.00 0.087±0.02 0.023±0.00 N/A N/A 1.940±0.68 N/A 0.968±0.48
ENSMUST00000175830 N/A N/A N/A 12.558±0.00 N/A 0.204±0.06 0.299±0.00 0.106±0.00 0.038±0.00 N/A N/A 1.167±0.00 0.075±0.01 N/A
ENSMUST00000175897 N/A N/A 0.119±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000058152 ENSMUST00000080721 0.306±0.07 0.372±0.07 0.369±0.17 0.842±0.29 0.732±0.57 1.301±0.17 0.163±0.03 0.255±0.08 1.121±0.68 1.341±0.64 0.039±0.02 0.899±0.50 1.759±0.86 0.110±0.02

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