C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ryanodine receptor 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198838 RYR3 9606 + 15:33310962-33866102 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000389232 RYR3-001 33310976-33866102 protein_coding
  ENST00000415757 RYR3-002 33310962-33866101 protein_coding
  ENST00000557931 RYR3-003 33820717-33821334 retained_intron
  ENST00000558060 RYR3-004 33821293-33825819 retained_intron
  ENST00000559333 RYR3-007 33847571-33854417 processed_transcript
  ENST00000559917 RYR3-006 33847116-33857855 processed_transcript
  ENST00000560791 RYR3-005 33852918-33857815 retained_intron
  ENST00000622037 RYR3-201 33310976-33866098 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389232ENST00000415757ENST00000559917ENST00000622037
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389232 N/A N/A 0.688±0.00 N/A N/A N/A N/A N/A 0.032±0.00 N/A 0.156±0.00 0.006±0.00 N/A
ENST00000415757 0.284±0.00 0.155±0.00 1.155±0.72 0.098±0.02 0.181±0.04 0.027±0.00 0.104±0.00 0.726±0.00 0.125±0.02 0.839±0.00 0.461±0.00 0.012±0.01 0.283±0.00
ENST00000559917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A
ENST00000622037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.080±0.00 0.004±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005219 ISS:IEA ryanodine-sensitive calcium-release channel activity
GO:0005262 IEA calcium channel activity
GO:0005488 IEA binding
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005783 IEA endoplasmic reticulum
GO:0006811 IEA ion transport
GO:0006816 IMP calcium ion transport
GO:0006874 IEA cellular calcium ion homeostasis
GO:0006941 IEA striated muscle contraction
GO:0015278 IMP calcium-release channel activity
GO:0016020 IEA membrane
GO:0016021 ISS:IEA integral component of membrane
GO:0030314 IEA junctional membrane complex
GO:0033017 ISS sarcoplasmic reticulum membrane
GO:0034220 TAS ion transmembrane transport
GO:0048471 IEA perinuclear region of cytoplasm
GO:0048763 IEA calcium-induced calcium release activity
GO:0051289 ISS protein homotetramerization
GO:0051481 IEA negative regulation of cytosolic calcium ion concentration
GO:0055085 TAS:IEA transmembrane transport
GO:0070588 ISS:IEA calcium ion transmembrane transport
GO:0071277 ISS cellular response to calcium ion
GO:0071286 ISS cellular response to magnesium ion
GO:0071313 ISS cellular response to caffeine
GO:0071318 ISS cellular response to ATP

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042531 ryanodine receptor 3 protein_coding Danio_rerio
ENSDARG00000071331 ryr3 ryanodine receptor 3 protein_coding Danio_rerio
ENSDARG00000089493 ryanodine receptor 3 protein_coding Danio_rerio
ENSMUSG00000057378 Ryr3 ryanodine receptor 3 protein_coding Mus_musculus

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