C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ryanodine receptor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389232 RYR3-001 ENSG00000198838 9606 + 15:33310976-33866102 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLungOvaryPlacentaENST00000389232
Transcript ID Brain Lung Ovary Placenta
ENST00000389232 0.688±0.00 0.032±0.00 0.156±0.00 0.006±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005219 ISS:IEA ryanodine-sensitive calcium-release channel activity
GO:0005262 IEA calcium channel activity
GO:0005488 IEA binding
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005783 IEA endoplasmic reticulum
GO:0006811 IEA ion transport
GO:0006816 IMP calcium ion transport
GO:0006874 IEA cellular calcium ion homeostasis
GO:0006941 IEA striated muscle contraction
GO:0015278 IMP calcium-release channel activity
GO:0016020 IEA membrane
GO:0016021 ISS:IEA integral component of membrane
GO:0030314 IEA junctional membrane complex
GO:0033017 ISS sarcoplasmic reticulum membrane
GO:0034220 TAS ion transmembrane transport
GO:0048471 IEA perinuclear region of cytoplasm
GO:0048763 IEA calcium-induced calcium release activity
GO:0051289 ISS protein homotetramerization
GO:0051481 IEA negative regulation of cytosolic calcium ion concentration
GO:0055085 TAS:IEA transmembrane transport
GO:0070588 ISS:IEA calcium ion transmembrane transport
GO:0071277 ISS cellular response to calcium ion
GO:0071286 ISS cellular response to magnesium ion
GO:0071313 ISS cellular response to caffeine
GO:0071318 ISS cellular response to ATP

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080673 Ryr3-001 protein_coding Mus_musculus 0 18810
ENSMUST00000091818 Ryr3-201 protein_coding Mus_musculus 0 18780
ENSMUST00000134358 Ryr3-002 processed_transcript Mus_musculus 0 18450
ENSMUST00000146187 Ryr3-004 retained_intron Mus_musculus 0 2405
ENSMUST00000137131 Ryr3-005 processed_transcript Mus_musculus 0 1801
ENSDART00000147464 ryr3-001 protein_coding Danio_rerio 0 898
ENSMUST00000170156 Ryr2-202 protein_coding Mus_musculus 0 883
ENSMUST00000021750 Ryr2-201 protein_coding Mus_musculus 0 883
ENSDART00000077838 ryr3-201 protein_coding Danio_rerio 0 660
ENSDART00000149737 ryr2b-001 protein_coding Danio_rerio 0 582
ENSMUST00000156757 Ryr3-003 retained_intron Mus_musculus 0 560
ENSMUST00000128192 Ryr3-006 retained_intron Mus_musculus 0 468
ENSMUST00000142537 Ryr3-007 processed_transcript Mus_musculus 0 449
ENSDART00000036015 ryr1b-201 protein_coding Danio_rerio 0 448
ENSMUST00000003705 Aven-001 protein_coding Mus_musculus 0 379
ENSDART00000014749 ryr1a-201 protein_coding Danio_rerio 0 244
ENSDART00000137089 ryr1a-001 protein_coding Danio_rerio 0 244

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